Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30593
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 83 6e-17
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 81 3e-16
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.9
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.9
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 27 3.3
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 4.4
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 26 5.8
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 7.6
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 82.6 bits (195), Expect = 6e-17
Identities = 35/74 (47%), Positives = 56/74 (75%)
Frame = +2
Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436
+Q+RAIR+KM ++I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+L
Sbjct: 159 SQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKIL 218
Query: 437 KRPRFEISKLMELH 478
K P+ + KL+ELH
Sbjct: 219 KAPKHDAQKLLELH 232
Score = 77.8 bits (183), Expect = 2e-15
Identities = 34/62 (54%), Positives = 48/62 (77%)
Frame = +3
Query: 72 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 251
L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT YA
Sbjct: 97 LTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYA 156
Query: 252 QT 257
Q+
Sbjct: 157 QS 158
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 80.6 bits (190), Expect = 3e-16
Identities = 35/74 (47%), Positives = 53/74 (71%)
Frame = +2
Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436
+Q+RAI +KM ++I ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+L
Sbjct: 159 SQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKIL 218
Query: 437 KRPRFEISKLMELH 478
K P+ + KL+ELH
Sbjct: 219 KAPKHDAQKLLELH 232
Score = 78.6 bits (185), Expect = 1e-15
Identities = 34/62 (54%), Positives = 48/62 (77%)
Frame = +3
Query: 72 LCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 251
L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT YA
Sbjct: 97 LTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYA 156
Query: 252 QT 257
Q+
Sbjct: 157 QS 158
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -1
Query: 470 PSTSRSRNGASSTLSPFGCKHRAE 399
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 290 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 421
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 706 LNRXAAHPPFASWLIAKRPHRSPFP 780
LNR PFA+ L+ PHR FP
Sbjct: 117 LNRTCNPVPFATRLLQSTPHRQLFP 141
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 49 LQEFGTRCSATSTAWTSQPISSGGWLKNGRLS 144
LQ+ G+ A+S AW S+ + S W++ +S
Sbjct: 628 LQQAGSLALASSKAWDSKTVISAWWVRIDEVS 659
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +3
Query: 66 QVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 173
+V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 116 RVFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 7.6
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = +3
Query: 114 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQTLRSEQSERKCVK 293
++ W L+ T GYV+R GFT+ ++ + K +A ++ ER +
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFADK-DTKLYERALQQ 853
Query: 294 SLHATS 311
SL S
Sbjct: 854 SLDTIS 859
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,421,793
Number of Sequences: 5004
Number of extensions: 68538
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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