Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30593
(839 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 103 2e-22
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 100 1e-21
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 100 1e-21
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272... 30 2.0
06_03_0290 - 19193707-19193752,19193822-19194090 30 2.0
08_01_0196 - 1619165-1619605,1620393-1620677,1621040-1621144 29 3.5
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 4.6
09_02_0094 + 4196729-4197571 29 4.6
04_01_0253 - 3358090-3359052 28 8.1
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 103 bits (246), Expect = 2e-22
Identities = 47/75 (62%), Positives = 57/75 (76%)
Frame = +3
Query: 69 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 248
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 249 AQTLRSEQSERKCVK 293
AQ + Q RK V+
Sbjct: 156 AQASQIRQIRRKMVE 170
Score = 87.8 bits (208), Expect = 9e-18
Identities = 37/74 (50%), Positives = 58/74 (78%)
Frame = +2
Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436
+Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+L
Sbjct: 159 SQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKIL 218
Query: 437 KRPRFEISKLMELH 478
K P+F++ KLME+H
Sbjct: 219 KAPKFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 100 bits (240), Expect = 1e-21
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 69 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 248
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 249 AQTLRSEQSERKCVK 293
AQ + Q RK V+
Sbjct: 156 AQASQIRQIRRKMVE 170
Score = 87.8 bits (208), Expect = 9e-18
Identities = 37/74 (50%), Positives = 58/74 (78%)
Frame = +2
Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436
+Q+R IR+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+L
Sbjct: 159 SQIRQIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKIL 218
Query: 437 KRPRFEISKLMELH 478
K P+F++ KLME+H
Sbjct: 219 KAPKFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 100 bits (240), Expect = 1e-21
Identities = 46/75 (61%), Positives = 56/75 (74%)
Frame = +3
Query: 69 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 248
VL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++TCY
Sbjct: 96 VLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKRTCY 155
Query: 249 AQTLRSEQSERKCVK 293
AQ + Q RK V+
Sbjct: 156 AQASQIRQIRRKMVE 170
Score = 86.6 bits (205), Expect = 2e-17
Identities = 37/74 (50%), Positives = 57/74 (77%)
Frame = +2
Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436
+Q+R IR+KM EI+ + +L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+L
Sbjct: 159 SQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKIL 218
Query: 437 KRPRFEISKLMELH 478
K P+F++ KLME+H
Sbjct: 219 KAPKFDLGKLMEVH 232
>11_05_0007 -
18324969-18325063,18326580-18326745,18327078-18327275,
18327377-18327643,18328070-18328129,18328767-18329033,
18329156-18329359,18329441-18331496,18332517-18333358
Length = 1384
Score = 30.3 bits (65), Expect = 2.0
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Frame = -2
Query: 478 VKFHQLRDLETGPLQHFHLSDANIAQRVDAMAGLLDVLGNGVRN-QLVHHLPEFRVSDVA 302
++F Q D++ ++ S ++ Q + M L NG+ N + + HL S++
Sbjct: 625 LRFLQTLDIKQTRIKELPSSVVHLTQLMRLMVDTWTKLPNGIGNMECLEHL-----SEID 679
Query: 301 CNDFTHFLSDCSDLSVWA*HVLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLT 122
+ + + + SDL LR L+ LL+ +K++ P + S + + H
Sbjct: 680 TSMYPSLMKELSDLPK-----LRVLE--LLLSTWEKSKEK-PFLDCFSCMKKLESLHIFA 731
Query: 121 IHLSLSVVRSMPWKLQ 74
H+SL + ++ W LQ
Sbjct: 732 PHISLDFMLNVDWTLQ 747
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 13 VAXRSRTSGSPGLQEFGTRCSATSTAWTSQPISSGGWLKNGRLSSKPTLM 162
V S +S S R +A S A T P S GW+ G S+ P+L+
Sbjct: 47 VGCGSSSSSSFAPPRMQARRAAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>08_01_0196 - 1619165-1619605,1620393-1620677,1621040-1621144
Length = 276
Score = 29.5 bits (63), Expect = 3.5
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 37 GSPGLQ-EFGTRCSATSTAWTSQPISSGGWLKNGR 138
G G+Q + G R S + WTS +++ GW NG+
Sbjct: 20 GQAGVQHDAGLRVSDYNRVWTSDRLTNRGWQNNGQ 54
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 4.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 329 EVVNKLIPDSIAKDIEKACHGIYPLRD 409
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>09_02_0094 + 4196729-4197571
Length = 280
Score = 29.1 bits (62), Expect = 4.6
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -2
Query: 292 FTHFLSDCSDLSVWA*HVLRWLKESLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHL 113
FT FL CS + H L++ KES L +P Y +VF + + F+ +
Sbjct: 139 FTMFLEGCSPFGPFWDHYLQYWKES-LKRPRDVLFLRYEEIVFDPLKVVRDLAGFIGVPF 197
Query: 112 SLSVVRS 92
+ V+S
Sbjct: 198 TEEEVKS 204
>04_01_0253 - 3358090-3359052
Length = 320
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 488 RLRREVPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRC 369
R RR +TSR+ +G +T + G R GRP RC
Sbjct: 67 RRRRRRETTSRATDGTMTTTTNTGGVRSKGRRGRGRPCRC 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,329,608
Number of Sequences: 37544
Number of extensions: 553215
Number of successful extensions: 1495
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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