Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30593
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    91   1e-18
Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr...    29   5.4  
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   5.4  
U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear fa...    28   7.2  
U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear fa...    28   7.2  
U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear fa...    28   7.2  
AC024783-1|AAY86294.1|  404|Caenorhabditis elegans Hypothetical ...    28   9.5  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 39/74 (52%), Positives = 58/74 (78%)
 Frame = +2

Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436
           +++R IR +M   I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++
Sbjct: 157 SKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKII 216

Query: 437 KRPRFEISKLMELH 478
           KRP+ ++ +L +LH
Sbjct: 217 KRPKVDLGRLHDLH 230



 Score = 81.0 bits (191), Expect = 1e-15
 Identities = 42/72 (58%), Positives = 48/72 (66%), Gaps = 2/72 (2%)
 Frame = +3

Query: 69  VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 248
           VL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I FT K     +KT Y
Sbjct: 94  VLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSY 153

Query: 249 AQT--LRSEQSE 278
            +T  +R  +SE
Sbjct: 154 TKTSKIRKIRSE 165



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 511 DKSERPEGYEPPVQESV 561
           +K +RP+ YEPPVQ+ V
Sbjct: 241 EKVDRPDDYEPPVQQEV 257


>Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical protein
            F57C7.1b protein.
          Length = 1087

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 503  PPCLHRLRREVPSTSRSRNGASST 432
            PP  HR+R + PS S SR G  S+
Sbjct: 971  PPLQHRMRSDSPSPSASRTGNQSS 994


>Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein
            F57C7.1a protein.
          Length = 1209

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 503  PPCLHRLRREVPSTSRSRNGASST 432
            PP  HR+R + PS S SR G  S+
Sbjct: 971  PPLQHRMRSDSPSPSASRTGNQSS 994


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 467 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 327
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>U21308-9|AAW57822.1|  787|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform b protein.
          Length = 787

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 532 PPAVQTCLGFPLASTAFAVKFHQLRDLETGP 440
           PP +Q C  +P+A T+ + +     D   GP
Sbjct: 320 PPPIQNCFPYPIAGTSDSQQMDMSEDSNDGP 350


>U21308-8|AAN60509.2|  807|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform a protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 532 PPAVQTCLGFPLASTAFAVKFHQLRDLETGP 440
           PP +Q C  +P+A T+ + +     D   GP
Sbjct: 340 PPPIQNCFPYPIAGTSDSQQMDMSEDSNDGP 370


>U21308-7|AAW57823.1|  823|Caenorhabditis elegans Nfi (nuclear
           factor i) family protein1, isoform c protein.
          Length = 823

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 532 PPAVQTCLGFPLASTAFAVKFHQLRDLETGP 440
           PP +Q C  +P+A T+ + +     D   GP
Sbjct: 356 PPPIQNCFPYPIAGTSDSQQMDMSEDSNDGP 386


>AC024783-1|AAY86294.1|  404|Caenorhabditis elegans Hypothetical
           protein Y45G5AL.2 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 752 RRGPTDRPSQQLRS*NGEWQIVSVNILFK 838
           + G   RP +QL   NGEWQ+ S+ I F+
Sbjct: 215 KTGTLPRPVEQLG--NGEWQMKSIQIAFE 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,813,890
Number of Sequences: 27780
Number of extensions: 417253
Number of successful extensions: 1078
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)