BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30593 (839 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 91 1e-18 Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical pr... 29 5.4 Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical pr... 29 5.4 L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical pr... 29 5.4 U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear fa... 28 7.2 U21308-8|AAN60509.2| 807|Caenorhabditis elegans Nfi (nuclear fa... 28 7.2 U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear fa... 28 7.2 AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 28 9.5 >Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical protein F56F3.5 protein. Length = 257 Score = 90.6 bits (215), Expect = 1e-18 Identities = 39/74 (52%), Positives = 58/74 (78%) Frame = +2 Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436 +++R IR +M I ++VT +L+EVV+KLIPDSI KDIEK C +YPL++V IRKVK++ Sbjct: 157 SKIRKIRSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKII 216 Query: 437 KRPRFEISKLMELH 478 KRP+ ++ +L +LH Sbjct: 217 KRPKVDLGRLHDLH 230 Score = 81.0 bits (191), Expect = 1e-15 Identities = 42/72 (58%), Positives = 48/72 (66%), Gaps = 2/72 (2%) Frame = +3 Query: 69 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 248 VL NFH M +T DKL +VKKW TLIEAN VKTTDGY LRVF I FT K +KT Y Sbjct: 94 VLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSY 153 Query: 249 AQT--LRSEQSE 278 +T +R +SE Sbjct: 154 TKTSKIRKIRSE 165 Score = 28.7 bits (61), Expect = 5.4 Identities = 10/17 (58%), Positives = 14/17 (82%) Frame = +1 Query: 511 DKSERPEGYEPPVQESV 561 +K +RP+ YEPPVQ+ V Sbjct: 241 EKVDRPDDYEPPVQQEV 257 >Z69646-2|CAA93475.1| 1087|Caenorhabditis elegans Hypothetical protein F57C7.1b protein. Length = 1087 Score = 28.7 bits (61), Expect = 5.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 503 PPCLHRLRREVPSTSRSRNGASST 432 PP HR+R + PS S SR G S+ Sbjct: 971 PPLQHRMRSDSPSPSASRTGNQSS 994 >Z69646-1|CAA93473.3| 1209|Caenorhabditis elegans Hypothetical protein F57C7.1a protein. Length = 1209 Score = 28.7 bits (61), Expect = 5.4 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = -1 Query: 503 PPCLHRLRREVPSTSRSRNGASST 432 PP HR+R + PS S SR G S+ Sbjct: 971 PPLQHRMRSDSPSPSASRTGNQSS 994 >L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical protein F54H12.8 protein. Length = 570 Score = 28.7 bits (61), Expect = 5.4 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = -1 Query: 467 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 327 S+S S N ASST S + R +P+ PWQ Q S +PPP Sbjct: 94 SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142 >U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear factor i) family protein1, isoform b protein. Length = 787 Score = 28.3 bits (60), Expect = 7.2 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = -2 Query: 532 PPAVQTCLGFPLASTAFAVKFHQLRDLETGP 440 PP +Q C +P+A T+ + + D GP Sbjct: 320 PPPIQNCFPYPIAGTSDSQQMDMSEDSNDGP 350 >U21308-8|AAN60509.2| 807|Caenorhabditis elegans Nfi (nuclear factor i) family protein1, isoform a protein. Length = 807 Score = 28.3 bits (60), Expect = 7.2 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = -2 Query: 532 PPAVQTCLGFPLASTAFAVKFHQLRDLETGP 440 PP +Q C +P+A T+ + + D GP Sbjct: 340 PPPIQNCFPYPIAGTSDSQQMDMSEDSNDGP 370 >U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear factor i) family protein1, isoform c protein. Length = 823 Score = 28.3 bits (60), Expect = 7.2 Identities = 10/31 (32%), Positives = 16/31 (51%) Frame = -2 Query: 532 PPAVQTCLGFPLASTAFAVKFHQLRDLETGP 440 PP +Q C +P+A T+ + + D GP Sbjct: 356 PPPIQNCFPYPIAGTSDSQQMDMSEDSNDGP 386 >AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical protein Y45G5AL.2 protein. Length = 404 Score = 27.9 bits (59), Expect = 9.5 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +2 Query: 752 RRGPTDRPSQQLRS*NGEWQIVSVNILFK 838 + G RP +QL NGEWQ+ S+ I F+ Sbjct: 215 KTGTLPRPVEQLG--NGEWQMKSIQIAFE 241 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,813,890 Number of Sequences: 27780 Number of extensions: 417253 Number of successful extensions: 1078 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 996 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1078 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2077023564 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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