Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30593
         (839 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   101   6e-22
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)            99   2e-21
At3g61035.1 68416.m06829 cytochrome P450 family protein similar ...    30   2.2  
At3g15410.1 68416.m01955 leucine-rich repeat family protein cont...    30   2.2  
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    29   2.9  
At5g62520.1 68418.m07847 expressed protein                             28   6.7  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  101 bits (242), Expect = 6e-22
 Identities = 45/72 (62%), Positives = 55/72 (76%)
 Frame = +3

Query: 69  VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 248
           VLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + +   ++TCY
Sbjct: 96  VLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCY 155

Query: 249 AQTLRSEQSERK 284
           AQ+ +  Q  RK
Sbjct: 156 AQSSQIRQIRRK 167



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 37/74 (50%), Positives = 61/74 (82%)
 Frame = +2

Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436
           +Q+R IR+KM +I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL++V IRKVK+L
Sbjct: 159 SQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKIL 218

Query: 437 KRPRFEISKLMELH 478
           K P+F++ KLM++H
Sbjct: 219 KAPKFDLGKLMDVH 232


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =   99 bits (238), Expect = 2e-21
 Identities = 45/72 (62%), Positives = 55/72 (76%)
 Frame = +3

Query: 69  VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 248
           VL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI FT + +   ++TCY
Sbjct: 96  VLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCY 155

Query: 249 AQTLRSEQSERK 284
           AQ+ +  Q  RK
Sbjct: 156 AQSSQIRQIRRK 167



 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 39/74 (52%), Positives = 61/74 (82%)
 Frame = +2

Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436
           +Q+R IR+KM EI+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL++V IRKVK+L
Sbjct: 159 SQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKIL 218

Query: 437 KRPRFEISKLMELH 478
           K P+F++ KLME+H
Sbjct: 219 KAPKFDLGKLMEVH 232


>At3g61035.1 68416.m06829 cytochrome P450 family protein similar to
           Cytochrome P450 76C2 (SP:O64637) [Arabidopsis thaliana]
          Length = 340

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = -2

Query: 424 LSDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVW 251
           L DA IA+R   +   +D L   + + ++  + E   S+V  ND  HFL   S +  W
Sbjct: 250 LIDARIAERSSQIGPRVDALRGDLLDSVIDLIQE-EGSEVDMNDIKHFLCTNSTIVEW 306


>At3g15410.1 68416.m01955 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596;
           identical to leucine-rich repeat protein [Arabidopsis
           thaliana] gi|2760084|emb|CAA76000
          Length = 584

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 218 GLLEPTQDVLRPD-TQVRAIRKKMCEIITRDVTN 316
           GLLEPT +VLR D   +R+IR+ + E  T+ V N
Sbjct: 542 GLLEPTLEVLRLDGNPLRSIRRPILERGTKAVLN 575


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 412 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLS 257
           +IAQRV  +AG+  +  N +    V  LP F    + C+D  H ++D +  S
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKS 476


>At5g62520.1 68418.m07847 expressed protein
          Length = 309

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 251 PDTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKAC 385
           P +Q+  I+K   +   R +T SEL + V  +  D +   I KAC
Sbjct: 259 PPSQILVIQKHYKDQQNRRITRSELIQRVRSITGDKLLVHIIKAC 303


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,977,847
Number of Sequences: 28952
Number of extensions: 397806
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1941125600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)