BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30593 (839 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi... 101 6e-22 At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB) 99 2e-21 At3g61035.1 68416.m06829 cytochrome P450 family protein similar ... 30 2.2 At3g15410.1 68416.m01955 leucine-rich repeat family protein cont... 30 2.2 At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]... 29 2.9 At5g62520.1 68418.m07847 expressed protein 28 6.7 >At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar to 40S ribosomal protein S3A (S phase specific protein GBIS289) GB:P49396 [Brassica rapa] Length = 262 Score = 101 bits (242), Expect = 6e-22 Identities = 45/72 (62%), Positives = 55/72 (76%) Frame = +3 Query: 69 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 248 VLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI FT + + ++TCY Sbjct: 96 VLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCY 155 Query: 249 AQTLRSEQSERK 284 AQ+ + Q RK Sbjct: 156 AQSSQIRQIRRK 167 Score = 89.8 bits (213), Expect = 2e-18 Identities = 37/74 (50%), Positives = 61/74 (82%) Frame = +2 Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436 +Q+R IR+KM +I+ R+ ++ +L+++V K IP++I ++IEKA GIYPL++V IRKVK+L Sbjct: 159 SQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKIL 218 Query: 437 KRPRFEISKLMELH 478 K P+F++ KLM++H Sbjct: 219 KAPKFDLGKLMDVH 232 >At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB) Length = 262 Score = 99 bits (238), Expect = 2e-21 Identities = 45/72 (62%), Positives = 55/72 (76%) Frame = +3 Query: 69 VLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 248 VL F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI FT + + ++TCY Sbjct: 96 VLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCY 155 Query: 249 AQTLRSEQSERK 284 AQ+ + Q RK Sbjct: 156 AQSSQIRQIRRK 167 Score = 93.1 bits (221), Expect = 2e-19 Identities = 39/74 (52%), Positives = 61/74 (82%) Frame = +2 Query: 257 TQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVL 436 +Q+R IR+KM EI+ ++ ++ +L+E+V K IP++I ++IEKA GIYPL++V IRKVK+L Sbjct: 159 SQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKIL 218 Query: 437 KRPRFEISKLMELH 478 K P+F++ KLME+H Sbjct: 219 KAPKFDLGKLMEVH 232 >At3g61035.1 68416.m06829 cytochrome P450 family protein similar to Cytochrome P450 76C2 (SP:O64637) [Arabidopsis thaliana] Length = 340 Score = 29.9 bits (64), Expect = 2.2 Identities = 18/58 (31%), Positives = 28/58 (48%) Frame = -2 Query: 424 LSDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVW 251 L DA IA+R + +D L + + ++ + E S+V ND HFL S + W Sbjct: 250 LIDARIAERSSQIGPRVDALRGDLLDSVIDLIQE-EGSEVDMNDIKHFLCTNSTIVEW 306 >At3g15410.1 68416.m01955 leucine-rich repeat family protein contains leucine rich-repeat (LRR) domains Pfam:PF00560, INTERPRO:IPR001611; contains similarity to Hcr2-5D [Lycopersicon esculentum] gi|3894393|gb|AAC78596; identical to leucine-rich repeat protein [Arabidopsis thaliana] gi|2760084|emb|CAA76000 Length = 584 Score = 29.9 bits (64), Expect = 2.2 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = +2 Query: 218 GLLEPTQDVLRPD-TQVRAIRKKMCEIITRDVTN 316 GLLEPT +VLR D +R+IR+ + E T+ V N Sbjct: 542 GLLEPTLEVLRLDGNPLRSIRRPILERGTKAVLN 575 >At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating], putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative strong similarity to SP|P49361 Glycine dehydrogenase [decarboxylating] A, mitochondrial precursor (EC 1.4.4.2) {Flaveria pringlei}; contains Pfam profile PF02347: Glycine cleavage system P-protein Length = 1037 Score = 29.5 bits (63), Expect = 2.9 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -2 Query: 412 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLS 257 +IAQRV +AG+ + N + V LP F + C+D H ++D + S Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKS 476 >At5g62520.1 68418.m07847 expressed protein Length = 309 Score = 28.3 bits (60), Expect = 6.7 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +2 Query: 251 PDTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKAC 385 P +Q+ I+K + R +T SEL + V + D + I KAC Sbjct: 259 PPSQILVIQKHYKDQQNRRITRSELIQRVRSITGDKLLVHIIKAC 303 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,977,847 Number of Sequences: 28952 Number of extensions: 397806 Number of successful extensions: 989 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 960 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 989 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1941125600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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