Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30592
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   3.8  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   5.0  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   5.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 149 HVSFHLHENRRAGRLLEILPIDPLNIQPY 63
           +VS H  +N+R+G  L++  +D L  + Y
Sbjct: 23  NVSLHSLKNKRSGASLQVGILDSLVFKCY 51


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = +2

Query: 326 VCAILTKMAMGSSLLRNCDTCSLLSERS 409
           +C ++  +   S ++  CD C++ S+++
Sbjct: 281 LCLVIYTLVSVSLVMVTCDACTIASKQT 308


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 6/28 (21%), Positives = 17/28 (60%)
 Frame = +2

Query: 326 VCAILTKMAMGSSLLRNCDTCSLLSERS 409
           +C ++  +   S ++  CD C++ S+++
Sbjct: 281 LCLVIYTLVSVSLVMVTCDACTIASKQT 308


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,475
Number of Sequences: 336
Number of extensions: 2789
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)