Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30591
(642 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 167 2e-40
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 111 1e-23
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 111 2e-23
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 111 2e-23
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 100 3e-20
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 97 3e-19
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 2e-18
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 92 9e-18
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 88 1e-16
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 82 1e-14
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 80 5e-14
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 71 3e-11
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 7e-11
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 67 4e-10
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 5e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 7e-10
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 66 9e-10
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 2e-09
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 64 3e-09
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 64 4e-09
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 62 8e-09
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 61 3e-08
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 60 4e-08
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 58 2e-07
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 57 3e-07
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 57 4e-07
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 55 2e-06
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 54 4e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 5e-06
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 51 2e-05
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 49 1e-04
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 48 1e-04
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 47 3e-04
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 45 0.001
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 44 0.002
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 44 0.003
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 42 0.017
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 40 0.039
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 39 0.12
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 38 0.16
UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 1.1
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 35 1.5
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 35 1.9
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 2.5
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 34 2.5
UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=... 33 5.9
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 5.9
UniRef50_UPI0000F1F8B1 Cluster: PREDICTED: hypothetical protein;... 33 7.7
UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin... 33 7.7
UniRef50_Q9VWU0 Cluster: CG15046-PA; n=2; Sophophora|Rep: CG1504... 33 7.7
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 7.7
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 167 bits (407), Expect = 2e-40
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = +3
Query: 255 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 434
SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEVVVSGKL
Sbjct: 83 SVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKL 142
Query: 435 RGQRAKSMKFVDGLMIHSGDPCN 503
RGQRAKSMKFVDGLMIHSGDP N
Sbjct: 143 RGQRAKSMKFVDGLMIHSGDPVN 165
Score = 142 bits (345), Expect = 5e-33
Identities = 71/82 (86%), Positives = 76/82 (92%)
Frame = +1
Query: 7 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 186
MAV ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 187 GEKGRRIRELTSVVQKRFNIPE 252
GEKGRRIRELT+VVQKRF PE
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPE 81
Score = 79.0 bits (186), Expect = 9e-14
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +2
Query: 494 PLQ*LVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 637
P+ V+TA RHVLLRQGVLGIKVKIMLPWD GK GPKKP PDH+ +
Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSI 210
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 111 bits (267), Expect = 1e-23
Identities = 56/81 (69%), Positives = 66/81 (81%)
Frame = +1
Query: 13 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 192
V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 193 KGRRIRELTSVVQKRFNIPEH 255
KG++I+ELTSVVQKRF E+
Sbjct: 62 KGKKIKELTSVVQKRFEFLEN 82
Score = 57.6 bits (133), Expect = 2e-07
Identities = 42/84 (50%), Positives = 45/84 (53%)
Frame = +3
Query: 255 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 434
SVEL AEKV RG AIAQAESLRYKL+GGLA+ L
Sbjct: 83 SVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM--------------------------L 116
Query: 435 RGQRAKSMKFVDGLMIHSGDPCND 506
QRAKSMKF DG +I SG P D
Sbjct: 117 CAQRAKSMKFKDGYLISSGQPVKD 140
Score = 52.4 bits (120), Expect = 9e-06
Identities = 25/49 (51%), Positives = 33/49 (67%)
Frame = +2
Query: 491 RPLQ*LVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 637
+P++ ++ A RHVL RQGVLGIKVKIM WD +GK P PD + +
Sbjct: 136 QPVKDYIDLAVRHVL-RQGVLGIKVKIMFNWDPKGKQSLTTPLPDLVTI 183
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 111 bits (266), Expect = 2e-23
Identities = 49/87 (56%), Positives = 66/87 (75%)
Frame = +3
Query: 231 EAIQHSRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 410
+ + ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R++MESGA+GC
Sbjct: 126 QRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVMESGAKGC 185
Query: 411 EVVVSGKLRGQRAKSMKFVDGLMIHSG 491
EV + GK++GQRAKSM F DG MI SG
Sbjct: 186 EVTIGGKIKGQRAKSMTFRDGYMIKSG 212
Score = 108 bits (259), Expect = 1e-22
Identities = 52/77 (67%), Positives = 64/77 (83%)
Frame = +1
Query: 22 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 201
+SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 202 RIRELTSVVQKRFNIPE 252
RIRELT+ +Q+RFN E
Sbjct: 116 RIRELTACLQQRFNYKE 132
Score = 34.7 bits (76), Expect = 1.9
Identities = 15/24 (62%), Positives = 18/24 (75%)
Frame = +2
Query: 509 VNTATRHVLLRQGVLGIKVKIMLP 580
V+TATRH LR G +G+ VKIM P
Sbjct: 219 VDTATRHCHLRAGTIGVNVKIMRP 242
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 111 bits (266), Expect = 2e-23
Identities = 52/87 (59%), Positives = 63/87 (72%)
Frame = +3
Query: 246 SRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 425
S + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLRF M +GA+G EVV+S
Sbjct: 81 SPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLRFAMGAGAKGVEVVIS 140
Query: 426 GKLRGQRAKSMKFVDGLMIHSGDPCND 506
GKLR RAKS K+ DG MIHSG P D
Sbjct: 141 GKLRAARAKSQKYADGFMIHSGQPTRD 167
Score = 108 bits (259), Expect = 1e-22
Identities = 52/78 (66%), Positives = 63/78 (80%), Gaps = 1/78 (1%)
Frame = +1
Query: 22 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 201
+SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 202 RIRELTSVVQKRFNI-PE 252
RI ELTS++ KRF + PE
Sbjct: 66 RIHELTSLIVKRFKLSPE 83
Score = 40.3 bits (90), Expect = 0.039
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +2
Query: 491 RPLQ*LVNTATRHVLLRQGVLGIKVKIM 574
+P + ++ A RHVL+RQGVLGIKVKIM
Sbjct: 163 QPTRDFIDIAIRHVLMRQGVLGIKVKIM 190
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 100 bits (239), Expect = 3e-20
Identities = 42/80 (52%), Positives = 61/80 (76%)
Frame = +3
Query: 255 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 434
S+E++ +++ +GL A+ Q ESLRYKLI + RRA Y ++RF+M++GARGCEV +SGKL
Sbjct: 84 SLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGARGCEVAISGKL 143
Query: 435 RGQRAKSMKFVDGLMIHSGD 494
RG RA + K+ +G M+ SGD
Sbjct: 144 RGARASTSKYKEGYMVKSGD 163
Score = 82.6 bits (195), Expect = 7e-15
Identities = 38/82 (46%), Positives = 54/82 (65%)
Frame = +1
Query: 7 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 186
M +K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 187 GEKGRRIRELTSVVQKRFNIPE 252
GRR++E+ ++QKR+ + E
Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKE 82
Score = 42.7 bits (96), Expect = 0.007
Identities = 20/43 (46%), Positives = 27/43 (62%)
Frame = +2
Query: 509 VNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 637
V A H+ ++Q +GI+V IML D G +GPK+ QPD I V
Sbjct: 169 VTQAVGHIPMKQATIGIRVLIMLAQDPSGISGPKESQPDVIKV 211
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 97.1 bits (231), Expect = 3e-19
Identities = 44/84 (52%), Positives = 61/84 (72%)
Frame = +3
Query: 255 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 434
SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ + A+GC+++VSGKL
Sbjct: 94 SVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGKL 153
Query: 435 RGQRAKSMKFVDGLMIHSGDPCND 506
+GQRAKS+KF DG++IHSGD D
Sbjct: 154 KGQRAKSVKFQDGVLIHSGDAVKD 177
Score = 50.8 bits (116), Expect = 3e-05
Identities = 21/72 (29%), Positives = 41/72 (56%)
Frame = +1
Query: 37 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 216
+F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 217 TSVVQKRFNIPE 252
+ +R +P+
Sbjct: 81 QHLAAQRLEVPD 92
Score = 48.4 bits (110), Expect = 1e-04
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +2
Query: 509 VNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 637
+NT V +QGV+GI+V+IMLP+D +G GP P PD I +
Sbjct: 179 INTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITI 221
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 94.3 bits (224), Expect = 2e-18
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1
Query: 25 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 195
SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
Score = 59.3 bits (137), Expect = 8e-08
Identities = 35/77 (45%), Positives = 42/77 (54%)
Frame = +3
Query: 384 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND*STLLPDMCFSDKEY*ESR 563
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N + S+
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 564 SKSCCRGTSKARTARRS 614
+SC GT A RS
Sbjct: 140 CRSCFPGTQAVTLALRS 156
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 92.3 bits (219), Expect = 9e-18
Identities = 39/88 (44%), Positives = 63/88 (71%)
Frame = +3
Query: 243 HSRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 422
+S ++++AE + +GLCA AQ E++ YKL+ + VR A +++ +++ GA+GCE+++
Sbjct: 92 YSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIII 151
Query: 423 SGKLRGQRAKSMKFVDGLMIHSGDPCND 506
SGKL+ QRAK+MKF G MI +G P ND
Sbjct: 152 SGKLKQQRAKTMKFKQGYMICTGQPKND 179
Score = 87.4 bits (207), Expect = 3e-16
Identities = 39/73 (53%), Positives = 56/73 (76%)
Frame = +1
Query: 22 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 201
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 202 RIRELTSVVQKRF 240
+ +ELT +QKRF
Sbjct: 78 KHKELTQFLQKRF 90
Score = 48.8 bits (111), Expect = 1e-04
Identities = 21/51 (41%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Frame = +2
Query: 491 RPLQ*LVNTATRHVLLRQGVLGIKVKIMLPWDQQ--GKNGPKKPQPDHILV 637
+P ++ A RHV +QG++G+KVKIMLP++ K G K P PD++++
Sbjct: 175 QPKNDYIDVAVRHVFFKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPDNVII 225
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 88.2 bits (209), Expect = 1e-16
Identities = 41/52 (78%), Positives = 45/52 (86%)
Frame = +3
Query: 351 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 506
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P D
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRD 81
Score = 54.8 bits (126), Expect = 2e-06
Identities = 22/48 (45%), Positives = 35/48 (72%)
Frame = +2
Query: 494 PLQ*LVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 637
P++ + + TRH LLRQG +G++VKIML D +G++GP P PD +++
Sbjct: 78 PVRDYIVSCTRHALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVI 125
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = +3
Query: 255 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 419
+VELYAEK R AIAQAESLR+KL+GGL VRRA YGVL F+MESG +GCEV+
Sbjct: 137 NVELYAEKFNNRVFYAIAQAESLRFKLLGGLVVRRAGYGVLSFVMESGTKGCEVI 191
Score = 55.6 bits (128), Expect = 1e-06
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +1
Query: 148 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEH 255
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E+
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLEN 136
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/50 (46%), Positives = 32/50 (64%)
Frame = +2
Query: 458 EVCRWTHDPLWRPLQ*LVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 607
EV W +P++ +N+ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 189 EVIGWYIISSGQPVKDYINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 79.8 bits (188), Expect = 5e-14
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = +3
Query: 264 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 443
++ +K+ RGL A ++LR KL + +RRA Y ++R M +GA GCEV+V+GKLR Q
Sbjct: 92 IWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAGCEVIVAGKLRAQ 151
Query: 444 RAKSMKFVDGLMIHSGDP 497
RA++ KF +G +I +G P
Sbjct: 152 RARANKFKEGCLISTGHP 169
Score = 41.5 bits (93), Expect = 0.017
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +1
Query: 37 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 216
K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 217 TSVVQKRF 240
++ RF
Sbjct: 76 EYLLAGRF 83
Score = 33.9 bits (74), Expect = 3.4
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +2
Query: 518 ATRHVLLRQGVLGIKVKIMLP 580
ATRH+ +RQGV+G+KV+I P
Sbjct: 177 ATRHIKMRQGVIGVKVRIYNP 197
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 70.5 bits (165), Expect = 3e-11
Identities = 30/49 (61%), Positives = 40/49 (81%)
Frame = +2
Query: 491 RPLQ*LVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 637
+P++ +++A RHVLLRQGVLGIKVKIML WD GK GPK P PD++++
Sbjct: 19 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPLPDNVVI 67
Score = 33.5 bits (73), Expect = 4.4
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 441 QRAKSMKFVDGLMIHSGDPCND 506
QRAKSMKF DG M+ SG P +
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKE 23
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 7e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +1
Query: 91 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 225
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 66.9 bits (156), Expect = 4e-10
Identities = 36/91 (39%), Positives = 54/91 (59%)
Frame = +3
Query: 234 AIQHSRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 413
A ++S + ++ A++V L A A L + G R+A + LR +M +GA GCE
Sbjct: 70 ANKYSLENPQIDAQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCE 129
Query: 414 VVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 506
VV+SGKL G R++ KFVDG + HSG+P +
Sbjct: 130 VVISGKLTGARSRVEKFVDGYIKHSGNPVEE 160
Score = 60.9 bits (141), Expect = 3e-08
Identities = 25/72 (34%), Positives = 48/72 (66%)
Frame = +1
Query: 31 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 210
++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 211 ELTSVVQKRFNI 246
+LT V ++++
Sbjct: 64 KLTRDVANKYSL 75
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 5e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +1
Query: 91 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 228
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 7e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1
Query: 91 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 225
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.007
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +1
Query: 91 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 186
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 65.7 bits (153), Expect = 9e-10
Identities = 28/72 (38%), Positives = 49/72 (68%)
Frame = +1
Query: 31 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 210
+R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 211 ELTSVVQKRFNI 246
ELT +++K+F +
Sbjct: 64 ELTRILEKQFGL 75
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/79 (43%), Positives = 47/79 (59%)
Frame = +3
Query: 261 ELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG 440
++ E++ L A QA L L G+ RRA Y LR IM +GARG E+ +SGKL G
Sbjct: 79 QIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSGKLTG 138
Query: 441 QRAKSMKFVDGLMIHSGDP 497
+RAKS++F G + G+P
Sbjct: 139 ERAKSIRFYQGYLAKVGNP 157
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +1
Query: 19 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 156
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 64.1 bits (149), Expect = 3e-09
Identities = 24/77 (31%), Positives = 53/77 (68%)
Frame = +1
Query: 22 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 201
++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 202 RIRELTSVVQKRFNIPE 252
IR++T+ ++ RFN+ +
Sbjct: 61 NIRKITTELEDRFNLDD 77
Score = 50.0 bits (114), Expect = 5e-05
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +3
Query: 312 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 491
A+ L L G R+A + + IMESGA G E+V+SGK+ G R++ KF G + H+G
Sbjct: 96 ADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNG 155
Query: 492 DPCND 506
+P +
Sbjct: 156 EPAEE 160
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 63.7 bits (148), Expect = 4e-09
Identities = 34/88 (38%), Positives = 49/88 (55%)
Frame = +3
Query: 234 AIQHSRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 413
A + S ++ ++V A AE L L G R+A +R IMESGA GCE
Sbjct: 70 ATDYDIESPQVEVQQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCE 129
Query: 414 VVVSGKLRGQRAKSMKFVDGLMIHSGDP 497
V+V+GKL G R+++ KF +G + H G+P
Sbjct: 130 VIVAGKLTGSRSRTQKFTEGYIKHCGEP 157
Score = 58.8 bits (136), Expect = 1e-07
Identities = 24/72 (33%), Positives = 47/72 (65%)
Frame = +1
Query: 31 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 210
++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 211 ELTSVVQKRFNI 246
+LT + ++I
Sbjct: 64 QLTQDLATDYDI 75
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 62.5 bits (145), Expect = 8e-09
Identities = 31/62 (50%), Positives = 41/62 (66%)
Frame = +3
Query: 312 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 491
A L L G RRA Y L IME+GA+GCE+ +SGKL +RA++ KFV G ++H+G
Sbjct: 95 ASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTG 154
Query: 492 DP 497
DP
Sbjct: 155 DP 156
Score = 47.2 bits (107), Expect = 3e-04
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +1
Query: 31 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 210
+RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 211 ELTSVVQKRFNI 246
LT + K F I
Sbjct: 64 ALTEKL-KDFGI 74
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 60.9 bits (141), Expect = 3e-08
Identities = 29/90 (32%), Positives = 51/90 (56%)
Frame = +3
Query: 228 TEAIQHSRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 407
T A ++S + ++ ++V L + L G+ R+ + +R +M SGA+G
Sbjct: 67 TLATEYSVKNPQIEVKQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKG 126
Query: 408 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDP 497
++VSGKL G+R+++ KF+DG M H G+P
Sbjct: 127 VAIIVSGKLSGERSRTEKFMDGYMKHCGEP 156
Score = 54.0 bits (124), Expect = 3e-06
Identities = 22/72 (30%), Positives = 43/72 (59%)
Frame = +1
Query: 31 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 210
+R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 211 ELTSVVQKRFNI 246
ELT + +++
Sbjct: 63 ELTETLATEYSV 74
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 60.1 bits (139), Expect = 4e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 4 IMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 183
+M N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 184 LGEKGRRIRELTSVVQKRF 240
+G +GR IR + VQ+RF
Sbjct: 62 IGRRGRNIRRVEEEVQERF 80
Score = 59.3 bits (137), Expect = 8e-08
Identities = 28/62 (45%), Positives = 41/62 (66%)
Frame = +3
Query: 312 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 491
A L L G+ RRA YG LR IM +GA+G +++SGKL G RA++ KF++G + + G
Sbjct: 104 ARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCG 163
Query: 492 DP 497
+P
Sbjct: 164 EP 165
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 58.0 bits (134), Expect = 2e-07
Identities = 22/72 (30%), Positives = 48/72 (66%)
Frame = +1
Query: 31 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 210
++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 211 ELTSVVQKRFNI 246
+T ++ +F++
Sbjct: 63 AITQKLKNKFDL 74
Score = 55.2 bits (127), Expect = 1e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +3
Query: 312 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 491
A + L G+ RR Y +R IM +GA+G EV +SGK+RG R+ + KF DG + G
Sbjct: 95 AHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCG 154
Query: 492 DP 497
+P
Sbjct: 155 EP 156
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 57.2 bits (132), Expect = 3e-07
Identities = 25/81 (30%), Positives = 53/81 (65%)
Frame = +1
Query: 7 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 186
M+V + K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 187 GEKGRRIRELTSVVQKRFNIP 249
G +G+ I+++T V+++ F IP
Sbjct: 61 GRRGQTIKQITKVLEEWFGIP 81
Score = 53.6 bits (123), Expect = 4e-06
Identities = 33/73 (45%), Positives = 41/73 (56%)
Frame = +3
Query: 276 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 455
KV L A A L L G RRA Y LR IM +GA G +V VSGKLRG+RA+
Sbjct: 89 KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARF 148
Query: 456 MKFVDGLMIHSGD 494
K++ G + SG+
Sbjct: 149 EKYIAGKVYKSGN 161
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 56.8 bits (131), Expect = 4e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +1
Query: 31 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 210
KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 211 ELTSVVQKRFNI 246
+L + +K F +
Sbjct: 65 QLAQIFEKVFGL 76
Score = 46.0 bits (104), Expect = 8e-04
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = +3
Query: 294 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 473
L A A L L G RRA + +R IM +GA G E+++SGKL +RA+ K +G
Sbjct: 91 LNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEG 150
Query: 474 LMIHSG 491
++ SG
Sbjct: 151 IVYKSG 156
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/74 (40%), Positives = 42/74 (56%)
Frame = +3
Query: 276 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 455
+V + L A A + L+ G+ RRA L IM +GARG E+V+SGKL QR ++
Sbjct: 85 EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRT 144
Query: 456 MKFVDGLMIHSGDP 497
KF G + SG+P
Sbjct: 145 EKFTRGYVPKSGEP 158
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +1
Query: 34 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 213
RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 214 LTSVVQKRFNI 246
+ V+++ F I
Sbjct: 66 IAEVLEREFGI 76
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 53.6 bits (123), Expect = 4e-06
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +1
Query: 31 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 210
KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 211 ELTSVVQKRFNI 246
+L V++K F +
Sbjct: 65 QLAQVLEKFFGL 76
Score = 49.2 bits (112), Expect = 8e-05
Identities = 30/66 (45%), Positives = 36/66 (54%)
Frame = +3
Query: 294 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 473
L A A L L G RRA + +R IM SGA G EV+VSGKL +RAK K +G
Sbjct: 91 LNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEG 150
Query: 474 LMIHSG 491
+ SG
Sbjct: 151 TVYKSG 156
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 5e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1
Query: 91 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 231
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 51.2 bits (117), Expect = 2e-05
Identities = 25/60 (41%), Positives = 37/60 (61%)
Frame = +1
Query: 67 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 246
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Score = 38.3 bits (85), Expect = 0.16
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 342 GLAVRRACYGVLRFIMES-GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 491
G A RRA ++ IME A G ++ +SGKLRG R+ K G++ +G
Sbjct: 106 GTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAG 156
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 354 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 506
R + LRF++ SG RGC + + G R +R K+ KF GL+ HSG ND
Sbjct: 158 RSIIFNTLRFLINSGVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNND 208
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 48.4 bits (110), Expect = 1e-04
Identities = 18/73 (24%), Positives = 43/73 (58%)
Frame = +1
Query: 28 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 207
K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 208 RELTSVVQKRFNI 246
+++T ++K++ I
Sbjct: 62 QQMTDTLEKKYGI 74
Score = 43.6 bits (98), Expect = 0.004
Identities = 21/62 (33%), Positives = 38/62 (61%)
Frame = +3
Query: 312 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 491
A+ + L G + R+A L +++GA+G + +SGK+ G+RA+ KF+ G + +SG
Sbjct: 95 AKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSG 154
Query: 492 DP 497
+P
Sbjct: 155 EP 156
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 47.2 bits (107), Expect = 3e-04
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +3
Query: 354 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGD 494
RR +LR +ME+GA G E+++SGKLR +RA+ K G + +GD
Sbjct: 113 RRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGD 159
Score = 45.2 bits (102), Expect = 0.001
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 31 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 210
K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 211 ELTSVVQKRFNI 246
+L +++Q F +
Sbjct: 67 KLMTIMQTHFGL 78
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 45.2 bits (102), Expect = 0.001
Identities = 25/67 (37%), Positives = 36/67 (53%)
Frame = +3
Query: 294 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 473
L A A L L G RRA + + IM++GARGC +++SGK+ G R + KF G
Sbjct: 94 LNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAGARGCLIILSGKISGPRHRVQKFQQG 153
Query: 474 LMIHSGD 494
+ G+
Sbjct: 154 HIKFCGE 160
Score = 41.1 bits (92), Expect = 0.022
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +1
Query: 34 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 213
R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 214 LTSVVQKRFNI 246
L ++ F +
Sbjct: 69 LQYRLKSDFKL 79
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 44.4 bits (100), Expect = 0.002
Identities = 19/71 (26%), Positives = 40/71 (56%)
Frame = +1
Query: 34 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 213
+K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E
Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71
Query: 214 LTSVVQKRFNI 246
+++++ + +
Sbjct: 72 ISNILTTKLGV 82
Score = 42.3 bits (95), Expect = 0.010
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +3
Query: 342 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 491
G+ RR + +R +ME+GA+G E+VVSGKL +RA+ K G + G
Sbjct: 116 GVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIG 165
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 44.0 bits (99), Expect = 0.003
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 342 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 491
G+ RRA LR + E+ +G EV++SGKL +R++ K+ G++I +G
Sbjct: 104 GIRFRRAAIIALRQLQEANVQGAEVIISGKLTTERSRFEKYTTGIVIKAG 153
Score = 41.5 bits (93), Expect = 0.017
Identities = 16/71 (22%), Positives = 40/71 (56%)
Frame = +1
Query: 34 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 213
++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 214 LTSVVQKRFNI 246
L +++ +FN+
Sbjct: 63 LADILKSKFNL 73
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 41.5 bits (93), Expect = 0.017
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 348 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 491
A RR L IM +GA G E+V++G+L GQR K+ +F G + +G
Sbjct: 108 AYRRLAQRYLETIMNAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTG 155
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 40.3 bits (90), Expect = 0.039
Identities = 22/74 (29%), Positives = 43/74 (58%)
Frame = -2
Query: 506 IIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLV 327
++ ++RVDHE++ L G+ ++Q +N T T H ++++T+ +++ +T +L
Sbjct: 105 VVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLSTSSHGKSQHTVGGSSHWQTVQQLG 164
Query: 326 S*RFGLGDSAKATS 285
FGL DS+ TS
Sbjct: 165 FQGFGL-DSSGQTS 177
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 38.7 bits (86), Expect = 0.12
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 246 SRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 425
++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ VS
Sbjct: 94 TKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQVS 153
Query: 426 GKLRG-QRAKSMKFVDG 473
G+L G + A+S F +G
Sbjct: 154 GRLNGAEMARSEMFKEG 170
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 38.3 bits (85), Expect = 0.16
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +3
Query: 348 AVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 473
A RRA + +MESGARG +V++SG+L G ++A++ K ++G
Sbjct: 130 AFRRAMKQAAQRVMESGARGVKVILSGRLGGAEQARTEKVLEG 172
>UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC
precursor - Enterococcus faecalis (Streptococcus
faecalis)
Length = 545
Score = 35.5 bits (78), Expect = 1.1
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 40 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 159
FVGDG F+ + EFL +L E+ G++V +TP+ + + +
Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 35.1 bits (77), Expect = 1.5
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +3
Query: 192 ERTQNP*AHFRSTEAIQHSRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 371
ER ++ + T QH R ++ + ++ L A + + L +A RRA G
Sbjct: 86 ERLRSELSKIVDTYKGQHKRVNINIV--EIRKPDLNAHLVGQQIAADLERRVAFRRAMRG 143
Query: 372 VLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 473
++ + +GA+G +VSG+L G A+ ++ +G
Sbjct: 144 AIQRVQRAGAKGVRTMVSGRLNGADIARKEQYTEG 178
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 34.7 bits (76), Expect = 1.9
Identities = 25/74 (33%), Positives = 35/74 (47%)
Frame = +3
Query: 219 FRSTEAIQHSRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 398
FR+ + + A V L V + AI AE L +L +A RRA VL I
Sbjct: 103 FRAKNGVSPT-AKVALQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDR 161
Query: 399 ARGCEVVVSGKLRG 440
+G ++ VSG+L G
Sbjct: 162 VQGAKIQVSGRLNG 175
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 2.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 308 PGRISKIQAYRRSRCTSCLLWCSPFHH 388
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 34.3 bits (75), Expect = 2.5
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 237 IQHSRASVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 416
+++ + + + L AI AE + KL R A +R M+SGA+G +
Sbjct: 96 LRNKELKLNIEVVNIKNPDLNAIILAEQIAIKLENRAPFRVAQKFAIRNAMKSGAKGIKT 155
Query: 417 VVSGKLRG-QRAKSMKFVDGLM 479
VSG+L G A+S + +G M
Sbjct: 156 QVSGRLNGVDMARSEGYSEGEM 177
>UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=1;
Arabidopsis thaliana|Rep: Uncharacterized protein
At3g06190.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 295
Score = 33.1 bits (72), Expect = 5.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 219 SELTDSASFLSEHTLCPGGHNNDLRADGSD 130
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 5.9
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 368 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 472
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
>UniRef50_UPI0000F1F8B1 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 499
Score = 32.7 bits (71), Expect = 7.7
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +2
Query: 32 SENLLEMGFSRQNSMS--SSLGSWPRTATPAW-KCGSLPSARRSLLWPPGHRVCSERKDA 202
S ++ SR NS+ SS R + W +C L RR+LLW PG VC R+D
Sbjct: 218 SVQFMDYKASRSNSVETHSSERRLQRNPSSEWCECEDLLLRRRALLWRPGGSVC-VREDE 276
Query: 203 ESVSS 217
S S
Sbjct: 277 SSPDS 281
>UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin H
- Ostreococcus tauri
Length = 322
Score = 32.7 bits (71), Expect = 7.7
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 336 IGGLAVRRACYGVLR----FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 482
+ GL R CYG R F+M+ GC+ S +L R K++ VD LM+
Sbjct: 146 LSGLKFRLVCYGATRPLDGFLMDVEDGGCKGATSKQLIECRKKALDIVDRLML 198
>UniRef50_Q9VWU0 Cluster: CG15046-PA; n=2; Sophophora|Rep:
CG15046-PA - Drosophila melanogaster (Fruit fly)
Length = 494
Score = 32.7 bits (71), Expect = 7.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 17 TIFQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPS 142
T QRS +L+ +G+ + L P P W CG LP+
Sbjct: 364 TRLQRSGSLVAVGWGKGEDTDCPLFEMPMRLRPTWACGDLPN 405
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 7.7
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 363 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 461
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 683,861,477
Number of Sequences: 1657284
Number of extensions: 14049261
Number of successful extensions: 41064
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 39474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41043
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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