BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30591 (642 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces... 140 2e-34 SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 28 1.3 SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 27 1.7 SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 27 1.7 SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 27 1.7 SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 26 5.3 SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 25 9.3 >SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces pombe|chr 2|||Manual Length = 249 Score = 140 bits (338), Expect = 2e-34 Identities = 64/84 (76%), Positives = 72/84 (85%) Frame = +3 Query: 255 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 434 +VELYAEKV RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCEVV+SGKL Sbjct: 85 TVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVISGKL 144 Query: 435 RGQRAKSMKFVDGLMIHSGDPCND 506 R RAKSMKF DG MIHSG P D Sbjct: 145 RAARAKSMKFADGFMIHSGQPAVD 168 Score = 126 bits (305), Expect = 2e-30 Identities = 63/82 (76%), Positives = 68/82 (82%) Frame = +1 Query: 10 AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 189 A ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG Sbjct: 3 AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62 Query: 190 EKGRRIRELTSVVQKRFNIPEH 255 EKGRRIRELT++VQKRF E+ Sbjct: 63 EKGRRIRELTALVQKRFKFAEN 84 Score = 52.0 bits (119), Expect = 7e-08 Identities = 27/49 (55%), Positives = 35/49 (71%) Frame = +2 Query: 491 RPLQ*LVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 637 +P +++ATRHVLLRQGVLG+KVKIMLP + K KK PD ++V Sbjct: 164 QPAVDFIDSATRHVLLRQGVLGVKVKIMLP---EPKTRQKKSLPDIVVV 209 >SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr 2|||Manual Length = 244 Score = 27.9 bits (59), Expect = 1.3 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%) Frame = +2 Query: 86 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAESVSSLP 223 L S+P AW+ LPS R+ L P P R+ ++K A +SS+P Sbjct: 8 LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59 >SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr 1|||Manual Length = 136 Score = 27.5 bits (58), Expect = 1.7 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 278 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 382 GG P RYRPG ++ + R + T L+ PF Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68 >SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr 2|||Manual Length = 136 Score = 27.5 bits (58), Expect = 1.7 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 278 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 382 GG P RYRPG ++ + R + T L+ PF Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68 >SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pombe|chr 2|||Manual Length = 136 Score = 27.5 bits (58), Expect = 1.7 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +2 Query: 278 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 382 GG P RYRPG ++ + R + T L+ PF Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68 >SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc10|Schizosaccharomyces pombe|chr 2|||Manual Length = 767 Score = 25.8 bits (54), Expect = 5.3 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = -1 Query: 585 SHGNMILTLIPSTPCL----RSTCLVAVLTNHCKGLQSGS*VHLQTSLIWHVDHAA 430 S G+++ L S PC R+ LT KG S S +L+T L W HA+ Sbjct: 408 SFGDLLDLLYASLPCTDRAGRTVVHHICLTAGIKGRGSASRYYLETLLNWAKKHAS 463 >SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 471 Score = 25.0 bits (52), Expect = 9.3 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Frame = -2 Query: 473 SIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLG--DS 300 S+Y + T+ LA+YN E I+ST S V R LG Sbjct: 296 SVYSTMAYAEATSNLAKYNTIAFGNCLDEKFEEEIISSTARSFFLGDEVKKRLLLGAYSL 355 Query: 299 AKATSSHLFS 270 A+ SS LFS Sbjct: 356 ARMNSSDLFS 365 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,759,861 Number of Sequences: 5004 Number of extensions: 56671 Number of successful extensions: 142 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 137 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 142 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 287744314 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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