Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30591
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 146 1e-35
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 30 1.8
08_02_0816 - 21499417-21499627,21502965-21503317,21505461-215056... 30 1.8
05_02_0069 - 6324082-6324495 29 2.4
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.1
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 4.1
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 29 4.1
09_04_0138 - 15021764-15021953,15023112-15023464,15023878-150240... 28 5.5
08_01_0346 - 3063440-3064189 28 7.2
05_06_0254 - 26706830-26706943,26707063-26707193,26707330-267074... 28 7.2
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 27 9.6
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 27 9.6
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 27 9.6
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 146 bits (355), Expect = 1e-35
Identities = 70/82 (85%), Positives = 74/82 (90%)
Frame = +3
Query: 258 VELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLR 437
VELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLRF+MESGA+GCEV+VSGKLR
Sbjct: 86 VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLR 145
Query: 438 GQRAKSMKFVDGLMIHSGDPCN 503
QRAKSMKF DG MI SG P N
Sbjct: 146 AQRAKSMKFKDGYMISSGYPVN 167
Score = 140 bits (339), Expect = 9e-34
Identities = 69/78 (88%), Positives = 73/78 (93%)
Frame = +1
Query: 22 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 201
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 202 RIRELTSVVQKRFNIPEH 255
RIRELTSVVQKRFN PE+
Sbjct: 67 RIRELTSVVQKRFNFPEN 84
Score = 66.9 bits (156), Expect = 1e-11
Identities = 29/48 (60%), Positives = 36/48 (75%)
Frame = +2
Query: 494 PLQ*LVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILV 637
P+ +++A RHVLLRQGVLGIKVKIML WD +GK GP P PD + +
Sbjct: 165 PVNLYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPMTPLPDLVTI 212
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 532 ASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGN 639
A +T S R G++ + P R+E + T RP PG+
Sbjct: 455 AERTMSLRGGGESAGSDSPCRREEAKSRTPRPQPGS 490
>08_02_0816 -
21499417-21499627,21502965-21503317,21505461-21505649,
21505819-21505973,21506026-21506245
Length = 375
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +3
Query: 384 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND*STLLPDMCFSDKEY*ESR 563
++E RG E V++ + + F + + DP ++ + C+SD +Y +
Sbjct: 128 MVEPAVRGTEYVINAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLDYCKET 187
Query: 564 SKSCCRGTSKARTA 605
C G + A A
Sbjct: 188 RNWYCYGKAVAEQA 201
>05_02_0069 - 6324082-6324495
Length = 137
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 314 GLGDSAKATSSHLFSIQFYRCSGMLNRFCTTEVSS 210
GLG S T++HL +I C G L R C+ V +
Sbjct: 37 GLGYSQLLTTAHLGAISSSSCGGRLGRQCSAAVGA 71
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 462 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 358
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 83 SLGSWPRTAT-PAWKCGSLPSARRSLLWPPGHRVCS 187
++ SWPR P W C S RR L P R C+
Sbjct: 10 AVSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCA 45
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -1
Query: 147 RADGSDPHFHAGVAVLGQLPSEELIEFCLENPIS 46
R DG +PH A + G ++ CL P S
Sbjct: 768 RQDGGEPHLQAAAVLAGSRGGDDAAHACLRRPSS 801
>09_04_0138 -
15021764-15021953,15023112-15023464,15023878-15024066,
15024171-15024299,15024469-15024642
Length = 344
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/71 (21%), Positives = 29/71 (40%)
Frame = +3
Query: 384 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND*STLLPDMCFSDKEY*ESR 563
++E RG E V+ + + F + + DP ++ + C+SD E+ +
Sbjct: 104 MVEPAVRGTEYVIKAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLEFCKKT 163
Query: 564 SKSCCRGTSKA 596
C G + A
Sbjct: 164 KNWYCYGKAVA 174
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 312 AESLRYKLIGGLAVRRACYGVLR 380
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_06_0254 -
26706830-26706943,26707063-26707193,26707330-26707417,
26707970-26708087,26708184-26708332,26708787-26708840,
26708963-26709031,26709146-26709246,26709391-26709473,
26709846-26710041,26710171-26710279
Length = 403
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 642 SVTRMWSGCGFFGPFLPCWSH 580
S T M S CGF G CW+H
Sbjct: 211 SSTGMQSNCGFEGQVNACWTH 231
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 492 LQSGS*VHLQTSLIWHVDHAACQIQQLHNHGH 397
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 278 GGYSWPLRYRPG-RISKIQAYRRSRCTSCLLWC 373
G SW RY+ ISK Y RC C++ C
Sbjct: 665 GALSWSRRYQIAIGISKGLPYLHERCRDCIIHC 697
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 496 LAMISQHCYQTCASQTRSTRNQGQNHVAVGPARQERPEE 612
L M+ + C + ASQ ++T N + P+ Q P+E
Sbjct: 825 LVMLDKACKEVGASQKKATNKSQANGNSNNPSSQSNPQE 863
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,987,596
Number of Sequences: 37544
Number of extensions: 412671
Number of successful extensions: 1232
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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