Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30590
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   3.4  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    25   5.9  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   5.9  
SPAC1786.01c ||SPAC31G5.20c|triacylglycerol lipase|Schizosacchar...    25   7.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   7.9  

>SPCC777.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -3

Query: 375 YHNFTHIFSLLYAREHCAVLHFP*NLSVVERMIVSRYPLY 256
           +++ +H F   Y   H A ++   +L +  R+++SR P Y
Sbjct: 92  FNDLSHAFHEKYPDVHFARVYLSSSLELSVRLLISRIPSY 131


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 94  ILHARWLIFFVCTFFCLCSLRIFR 23
           +LH+ W+ F VC  F + +L IFR
Sbjct: 256 LLHSFWMAFIVCLTFQI-ALLIFR 278


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 423 SFRIILTSGARASSFFYH 370
           + R+  T G+R SSF YH
Sbjct: 348 ALRLFATDGSRLSSFLYH 365


>SPAC1786.01c ||SPAC31G5.20c|triacylglycerol
           lipase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 276 VSRYPLYITLFLVTTAA*HLVLFE*LSIHCH 184
           + R+PL  T FL  T    L L + L I+C+
Sbjct: 73  ILRWPLMFTAFLCLTFVAFLYLLDRLYINCY 103


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 139 ITI*NHL*VALV*Y*ILHARWLIFFVCTFFCLCSLRIF 26
           + + NHL   +  + +L +  L F + TFFCL    ++
Sbjct: 180 VALDNHL-ATISRFILLDSMLLFFIISTFFCLSRYHVY 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,067
Number of Sequences: 5004
Number of extensions: 36530
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)