Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30590
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0048 + 15959234-15959590,15959973-15960314 31 0.48
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366... 29 2.6
02_04_0238 + 21186072-21186883,21187315-21189346 28 3.4
02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,233... 28 3.4
09_04_0726 + 19758916-19759098,19759774-19760318,19760581-197614... 27 5.9
07_01_0025 - 172742-173260,174559-174621,174701-174763,174852-17... 27 5.9
04_04_0065 + 22456225-22456744,22456813-22457768 27 5.9
04_03_0362 + 14934236-14934541,14935549-14935647,14935736-149357... 27 5.9
>06_03_0048 + 15959234-15959590,15959973-15960314
Length = 232
Score = 31.1 bits (67), Expect = 0.48
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 286 TNDCEPISFVHNIIFGNNSSLTFSSLRMIIDTLPPP 179
T+DC PI F + ++L + S +M+I LPPP
Sbjct: 52 TSDCAPILFRDGLDEDYGNTLNYFSKKMLIVPLPPP 87
>02_01_0502 -
3659564-3659660,3659923-3660061,3660161-3660238,
3660486-3660654,3660757-3660873,3660956-3661102,
3661203-3661388,3661472-3661720,3662196-3662432,
3662511-3662673,3662748-3662866,3662976-3663068,
3663595-3663735,3663813-3663896,3663974-3664084,
3664162-3664260,3664501-3664623,3664908-3664958,
3665152-3665275,3665357-3665514,3665595-3665709,
3665931-3666060,3666163-3666328,3667047-3667136,
3667650-3667857,3668270-3668439,3668542-3668577
Length = 1199
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 203 DYRYIATSDVLNFVPYTPSNIDNDLKP 123
DYRY+ATSD+L+ + D D++P
Sbjct: 19 DYRYMATSDLLSELNKEGFKADQDIEP 45
>02_04_0238 + 21186072-21186883,21187315-21189346
Length = 947
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 298 KILRKVQNGTVFSGIQQAEDMGKIMVEER 384
KILR++ +G ++G++ A D GK++ E R
Sbjct: 236 KILREILSGIGYNGLEAAWDEGKLIHEVR 264
>02_01_0331 + 2331774-2331985,2332825-2332952,2333392-2333452,
2333878-2334035,2335001-2335083,2336364-2336468,
2336659-2336756,2337136-2337256,2337366-2337416,
2337987-2338179,2338277-2338845,2338964-2339017,
2339250-2339412,2340155-2340417,2340530-2340717,
2341875-2341945,2342021-2342309,2343962-2344027,
2344186-2344303,2344468-2344575,2344656-2344805,
2344892-2345065,2345161-2345232
Length = 1164
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 250 CYVQRISAHNHSFHDAKILRKVQNGTVFSGIQQ-AEDMGKIMVEERGRSGAGSQDD 414
C ++ + HS L+K+ +G++ S +QQ D ++ G G GSQ +
Sbjct: 1109 CQLEEMQNAGHSVDQCDRLKKLLHGSLISHLQQVVVDSDDVLSSLGGGKGMGSQSN 1164
>09_04_0726 +
19758916-19759098,19759774-19760318,19760581-19761492,
19762067-19762328
Length = 633
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -1
Query: 215 FSS--NDYRYIATSDVLNFVPYTPSNIDNDLKPFVSCPGL 102
FSS N+Y ++ SD F TPS +L+PF+ PG+
Sbjct: 541 FSSDKNEYSHLLVSD---FSDTTPSLPPEELRPFMVAPGM 577
>07_01_0025 -
172742-173260,174559-174621,174701-174763,174852-174950,
175792-175818,175946-176251
Length = 358
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 342 YAREHCAVLHFP*NLSVVERMIVSRYPLYITLFLVTTA 229
+ R AV +FP + + R+ +SR+PL+ + LV +A
Sbjct: 28 FPRLSVAVFYFPSLIPLSPRISLSRFPLFFSSLLVFSA 65
>04_04_0065 + 22456225-22456744,22456813-22457768
Length = 491
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 46 GKRKYKQKRSTTEHAVFSIKPGQLTNGF 129
G Y+ RS + +F +K QLTNGF
Sbjct: 154 GYMGYRYYRSFLDKGIFPLKEEQLTNGF 181
>04_03_0362 +
14934236-14934541,14935549-14935647,14935736-14935798,
14935878-14935940,14937242-14937362,14937472-14937872,
14937968-14938141,14938252-14938570,14938659-14938735,
14938808-14938877,14938951-14939007,14939100-14939314,
14939436-14939561,14939649-14939944,14940032-14940203,
14940300-14940398,14940471-14940602,14940692-14940792,
14941391-14941580,14941819-14941842
Length = 1034
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -3
Query: 342 YAREHCAVLHFP*NLSVVERMIVSRYPLYITLFLVTTA 229
+ R AV +FP + + R+ +SR+PL+ + LV +A
Sbjct: 28 FPRLSVAVFYFPSLIPLSPRISLSRFPLFFSSLLVFSA 65
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,641,255
Number of Sequences: 37544
Number of extensions: 223611
Number of successful extensions: 581
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -