Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30590
(476 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_15623| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_54075| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_33446| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-26) 28 4.5
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.0
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59) 27 6.0
SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02) 27 7.9
SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0) 27 7.9
SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66) 27 7.9
>SB_41973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2504
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 53 ESTNKKDQPPSMQYSVSNQGNLQMVLNRYLYYLVYTGRNSGHRRWQCIDNHSK 211
E NK+D PS++ ++ + M + RYL Y + R W D+HS+
Sbjct: 2204 EGVNKEDPFPSIETNIGSLPEYNMYILRYLLYTIALFRTPS--SWILFDSHSR 2254
>SB_15623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 301 ILRKVQNGTVFSGIQQAEDMGKIMVEERGRSGAGSQDD 414
+L+ +QN T + Q E KIM E++GR S DD
Sbjct: 43 MLQDMQNSTEELSLSQKEVFVKIMKEKKGRPSTWSVDD 80
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 28.3 bits (60), Expect = 3.4
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +3
Query: 183 GGNVSIIIRRELNV--KLLLLPKIMLCTKDIGSQSFVPRR*DSKESAKRH 326
GGNV I++ R+L L +I +C K I S R +S E AK H
Sbjct: 2624 GGNVPILMNRKLMSLESRQDLSRIAICRKVIDSMLHKIERNESTEKAKEH 2673
>SB_54075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 729
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 37 DCKGKRKYKQKRSTTEHAVFSIKPGQLTNGFKSLSILLGVY 159
DC K K K + + S+ P LT+G SL I+ GV+
Sbjct: 361 DCLSKFKSSLKTIFENNLITSL-PENLTDGLNSLQIIFGVF 400
>SB_33446| Best HMM Match : 7tm_1 (HMM E-Value=6.7e-26)
Length = 291
Score = 27.9 bits (59), Expect = 4.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 79 WLIFFVCTFFCLCSLRIFRFTVI 11
W+ F+CT FCL ++ R+T +
Sbjct: 93 WIYSFLCTSFCLGAISYDRYTAV 115
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 289 HDAKILRKVQNGTVFSGIQQAEDMGKIMVEERGRSGAG 402
HD+ R +Q F G E +G ++ ++G SGAG
Sbjct: 583 HDSPQFRSIQPIPAFKGAAVYEKLGGRVLTDKGPSGAG 620
>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 39 LQRQKKVQTKKINHRACSIQYQTRATYK 122
L R+ KVQT+K + C + QTR + K
Sbjct: 109 LTRKSKVQTRKCKVQTCKCKVQTRKSKK 136
>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
Length = 341
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 39 LQRQKKVQTKKINHRACSIQYQTRATYK 122
L R+ KVQT+K + C + QTR + K
Sbjct: 109 LTRKSKVQTRKCKVQTCKCKVQTRKSKK 136
>SB_39277| Best HMM Match : Gamma-BBH (HMM E-Value=0.02)
Length = 210
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 369 NFTHIFSLLYAREHCA 322
N TH F +Y R+HCA
Sbjct: 58 NVTHYFPYMYLRDHCA 73
>SB_28563| Best HMM Match : Gamma-BBH (HMM E-Value=0)
Length = 448
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 369 NFTHIFSLLYAREHCA 322
N TH F +Y R+HCA
Sbjct: 84 NVTHYFPYMYLRDHCA 99
>SB_12939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 182 SDVLNFVPYTPSNIDNDLK 126
SD+ VPYTP I ND+K
Sbjct: 190 SDIKWSVPYTPRQISNDIK 208
>SB_42227| Best HMM Match : SDA1 (HMM E-Value=0.66)
Length = 806
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 143 YYLVYTGRNSGHRRWQCIDNHSKRTKCQAAVVTKNNVMYKG 265
YYLV TGR +G R+Q T+C T N +Y G
Sbjct: 87 YYLVKTGRGAGFARFQL-----PETQCYFCASTAFNSVYIG 122
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,687,339
Number of Sequences: 59808
Number of extensions: 271040
Number of successful extensions: 752
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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