Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30590
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical ...    28   4.0  
AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical p...    27   9.2  
U80443-6|AAK68201.1|  643|Caenorhabditis elegans Ferm domain (pr...    27   9.2  
U80443-5|AAD32269.1|  635|Caenorhabditis elegans Ferm domain (pr...    27   9.2  
AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical ...    27   9.2  
AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z69788-2|CAA93645.1|  303|Caenorhabditis elegans Hypothetical
           protein F09A5.3 protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +3

Query: 231 LLLPKIMLCTKDIGSQSFVPRR*DSKESAKRHSVLW 338
           L LP++ L  K++  +  + +R D +  AK+HS LW
Sbjct: 204 LQLPQVGLTNKNLNQKVALEKRTDLEAIAKQHSFLW 239


>AF067611-1|AAC19182.1|  603|Caenorhabditis elegans Hypothetical
           protein C45G7.4 protein.
          Length = 603

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/61 (19%), Positives = 29/61 (47%)
 Frame = -2

Query: 325 CRFALSLES*RRGTNDCEPISFVHNIIFGNNSSLTFSSLRMIIDTLPPPMS*ISSRIHQV 146
           CR   +  + R+   + +    + N+      ++T   +  ++  LPPPM+ +SS   ++
Sbjct: 72  CRREFTTNTARQAPTNYDLCKILENLFRRKEQNVTVIEVPELVHNLPPPMAEVSSSATKI 131

Query: 145 I 143
           +
Sbjct: 132 V 132


>AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical
           protein Y50C1A.1 protein.
          Length = 642

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 119 QMVLNRYLYYLVYTG--RNSGHRRWQCIDNHSKRTKCQAAVVTKN 247
           Q+ L   LY L+  G  + +  RRW+ ++NH  ++   A  +++N
Sbjct: 151 QLSLRETLYELLTNGARKEAIRRRWKWVENHMNQSNGLALTLSEN 195


>Z69664-11|CAA93518.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 NQGNLQMVLNRYLYYLVYT-GRNSGHRRWQCIDNHSKRT 217
           N    Q+V+NR+LY+LV + G N     WQ  + + K +
Sbjct: 93  NAVEAQVVVNRFLYWLVKSRGFNKRSPHWQLSNVYVKHS 131


>U80443-6|AAK68201.1|  643|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 4,
           isoform b protein.
          Length = 643

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 265 ISAHNHSFHDAKILRKVQNGTVFSGIQQAEDMGKIMVEERG 387
           +    HS H+++ L K  NG + +G     D+GK  V   G
Sbjct: 507 VHTQQHSDHNSQNLEKNGNGKLANGGGSGVDLGKKTVHTNG 547


>U80443-5|AAD32269.1|  635|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 4,
           isoform a protein.
          Length = 635

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 265 ISAHNHSFHDAKILRKVQNGTVFSGIQQAEDMGKIMVEERG 387
           +    HS H+++ L K  NG + +G     D+GK  V   G
Sbjct: 499 VHTQQHSDHNSQNLEKNGNGKLANGGGSGVDLGKKTVHTNG 539


>AL022716-7|CAA18775.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 NQGNLQMVLNRYLYYLVYT-GRNSGHRRWQCIDNHSKRT 217
           N    Q+V+NR+LY+LV + G N     WQ  + + K +
Sbjct: 93  NAVEAQVVVNRFLYWLVKSRGFNKRSPHWQLSNVYVKHS 131


>AL021570-1|CAA16510.2| 1479|Caenorhabditis elegans Hypothetical
           protein C24F3.5 protein.
          Length = 1479

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 104 NQGNLQMVLNRYLYYLVYT-GRNSGHRRWQCIDNHSKRT 217
           N    Q+V+NR+LY+LV + G N     WQ  + + K +
Sbjct: 93  NAVEAQVVVNRFLYWLVKSRGFNKRSPHWQLSNVYVKHS 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,377,341
Number of Sequences: 27780
Number of extensions: 209894
Number of successful extensions: 671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)