Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30590
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   5.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   5.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   5.1  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   6.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.8  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 262 RISAHNHSFHDAKIL 306
           RI A NH F DA++L
Sbjct: 221 RIDAINHMFEDARLL 235


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 250 IIFGNNSSLTFSSLRMIIDTLPPPMS*ISS 161
           I+ G N+ LTF +L   ++   P +S I +
Sbjct: 264 IVLGTNTILTFMTLASKVENSLPKVSYIKA 293


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 371 IILPISSACCMPENTVPFCTFL 306
           +I+P    CC  +  V F T+L
Sbjct: 348 VIVPFCPDCCPSDRMVYFITWL 369


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 371 IILPISSACCMPENTVPFCTFL 306
           +I+P    CC  +  V F T+L
Sbjct: 348 VIVPFCPDCCPSDRMVYFITWL 369


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 371 IILPISSACCMPENTVPFCTFL 306
           +I+P    CC  +  V F T+L
Sbjct: 348 VIVPFCPDCCPSDRMVYFITWL 369


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 188 QCIDNHSKRTKCQAA 232
           QC+DN     KC  A
Sbjct: 100 QCVDNAKNEDKCLTA 114


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 119 VSCPGLILNTACSVVDLFC 63
           +SC   ILN     VD FC
Sbjct: 123 LSCTASILNLCMISVDRFC 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,912
Number of Sequences: 438
Number of extensions: 2741
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)