Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30590
         (476 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP...    30   0.93 
At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein ...    29   1.2  
At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein ...    29   1.2  
At5g45650.1 68418.m05613 subtilase family protein contains Pfam ...    29   1.6  
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    29   2.2  
At1g32010.1 68414.m03938 myosin heavy chain-related                    28   3.8  
At3g61590.1 68416.m06898 F-box family protein contains weak hit ...    27   6.6  
At2g15580.1 68415.m01784 zinc finger (C3HC4-type RING finger) fa...    27   6.6  
At1g16180.1 68414.m01938 TMS membrane family protein / tumour di...    27   6.6  
At2g03720.1 68415.m00332 universal stress protein (USP) family p...    27   8.7  
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR...    27   8.7  

>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
           TBP-interacting protein TIP120 GI:1799570 from [Rattus
           norvegicus]
          Length = 1219

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 203 DYRYIATSDVLNFVPYTPSNIDNDLK 126
           DYRY+ATSD+LN +      ID DL+
Sbjct: 21  DYRYMATSDLLNELNKDSFKIDLDLE 46


>At1g34370.2 68414.m04268 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 499

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +2

Query: 110 GNLQMVLNRYLYYLVYTGRNSGHRRWQ------CIDNHSKRTKC 223
           G+  M++ RY    +   RN  H+++Q      C+ NH KRT C
Sbjct: 286 GSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHC 329


>At1g34370.1 68414.m04267 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 499

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = +2

Query: 110 GNLQMVLNRYLYYLVYTGRNSGHRRWQ------CIDNHSKRTKC 223
           G+  M++ RY    +   RN  H+++Q      C+ NH KRT C
Sbjct: 286 GSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHC 329


>At5g45650.1 68418.m05613 subtilase family protein contains Pfam
           domain, PF00082: Subtilase family; contains Pfam domain,
           PF02225: protease associated (PA) domain
          Length = 791

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 200 YRYIATSDVLNFVPYTPSNID-NDLKPFVSCPGLILNTACSVVD 72
           Y+Y A   +  F    P+ +D N LKP ++ PGL +  A S  D
Sbjct: 514 YKYQAAPSMTGFSSRGPNVVDPNILKPDITAPGLYILAAWSGAD 557


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 206 NDYRYIATSDVLNFVPYTPSNIDNDLKPFVSCPGLILNTA 87
           ND +    ++  + VP+ P+   + L PF+S P  + +TA
Sbjct: 18  NDTKRHRNAETPHLVPHAPARYVSSLSPFISTPRSVNHTA 57


>At1g32010.1 68414.m03938 myosin heavy chain-related
          Length = 835

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 212 RTKCQAAVVTKNNVMYKGY--RLTIIRSTTLRF*GKCKTAQCSLAYN 346
           R +CQA  V  NN++   Y   L   R   L   GK K A+ ++AYN
Sbjct: 533 RAECQA--VGANNLLISRYDRNLRSAREKILELEGKLKNAERTIAYN 577


>At3g61590.1 68416.m06898 F-box family protein contains weak hit to
           Pfam PF00646: F-box domain; stamina pistilloidia (Stp) -
           Pisum sativum, EMBL:AF004843
          Length = 411

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 110 GNLQMVLNRYLYYLVYTGRNSGHRRWQCIDNHS 208
           GN  ++ N  LY+++Y+   S HR      N S
Sbjct: 238 GNESVICNNVLYFMIYSTGGSDHRHGLIASNLS 270


>At2g15580.1 68415.m01784 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 196

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 135 RFKTICKLPWFDTE-YC 88
           +F +IC LPW DT  YC
Sbjct: 171 KFHSICLLPWLDTNVYC 187


>At1g16180.1 68414.m01938 TMS membrane family protein / tumour
           differentially expressed (TDE) family protein contains
           Pfam domain, PF03348: TMS membrane protein/tumour
           differentially expressed protein (TDE)
          Length = 412

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = +2

Query: 125 VLNRYLYYLVYTGRNSGHRRWQC--IDNHSK 211
           V++ Y  YL Y+G  S  R ++C  + NHSK
Sbjct: 247 VISLYCMYLCYSGLASEPRDYECNGLHNHSK 277


>At2g03720.1 68415.m00332 universal stress protein (USP) family
           protein contains Pfam profile PF00582: universal stress
           protein family
          Length = 165

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 304 LRKVQNGTVFSGIQQAEDMGKIMVEERGRSGAG 402
           L+K    T    ++ AE+ GK +VEE  + GAG
Sbjct: 66  LKKPNVKTEIVVVETAEEKGKTIVEESKKQGAG 98


>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1544

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 428 YLASESS*LPAPERPRSSTIILPISS 351
           YL ++    PA E+P+SS I +P+ S
Sbjct: 732 YLKNKLVRFPAEEKPKSSEITIPVES 757


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,553,085
Number of Sequences: 28952
Number of extensions: 188799
Number of successful extensions: 509
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)