Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30589
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   3.9  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    26   5.1  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   6.7  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   8.9  

>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -1

Query: 487 ISTLCKKLHDIGVIYKLRGILCFPSHHRILTSDIT*VTS*HHVG 356
           +STL ++   I +  K + +       RILTS+IT V   HH+G
Sbjct: 465 MSTLKRQARSISMNKKTKRLDSLQLKGRILTSNITTVVPNHHMG 508


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 179 LSHQKMFHHLKNLSVVLFPVVTYIAHTHSHIRSTLFS 69
           + H++ F + KN S+V   V +   HTHS +   + S
Sbjct: 449 VKHEQQFTYQKNESLVEATVQSISQHTHSELEDAIDS 485


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = -3

Query: 236 LLYAYGNFFLIPS-IKLDTTLSHQKMFHHLKNLSVVLFPVVTYIAHTHSHI---RSTLFS 69
           +L  Y +FF + +  K++T LS     HH+     +L  ++T +A   S++   R  L S
Sbjct: 178 MLIGYPSFFFLKNGSKIETRLSLLPKLHHMS--EEILRSIMTELADYGSNLEFFRQKLTS 235

Query: 68  PTRTF 54
           P+ +F
Sbjct: 236 PSDSF 240


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -3

Query: 254 SLGRNNLLYAYGNFFLIPSIKLDTTLSHQKMF-HHLKNLSVVLFPVVTYIAHTHSHIRST 78
           +LG   +LY++        I     + H  +F + +  +S  LFP+VTY A     +   
Sbjct: 451 ALGMTPILYSFYALLCCYYIYSYKLIPHSSIFVYTVPIISTFLFPMVTYAALRFGEVAVD 510

Query: 77  LFSPTR 60
           ++   R
Sbjct: 511 IYKSIR 516


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 296  SPTAFLSLQNSTCESLGRNNLLYAYGNF 213
            +PT  L LQN+   SL   + +  Y NF
Sbjct: 1335 APTPLLDLQNAPVSSLNNPSFISLYPNF 1362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,253
Number of Sequences: 5004
Number of extensions: 63538
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)