Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30589
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)                    28   7.2  
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 28   7.2  
SB_18387| Best HMM Match : Utp12 (HMM E-Value=1.1e-06)                 28   9.5  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              28   9.5  

>SB_56517| Best HMM Match : CUB (HMM E-Value=0.0011)
          Length = 734

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/48 (39%), Positives = 22/48 (45%)
 Frame = -3

Query: 182 TLSHQKMFHHLKNLSVVLFPVVTYIAHTHSHIRSTLFSPTRTFPLLFH 39
           TLS  +   H  + S  L    T I HTHSH  S LF+ T     L H
Sbjct: 253 TLSFTRTLIHTHSHSHALLFTRTLI-HTHSHPHSLLFTRTIIHTTLIH 299


>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 399

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 209 LIPSIKLDTTLSHQKMFHHLKNLSVVLFPVVTYIAHTHSHIRSTLFSP--TRTFPLL 45
           L+P+ ++ +  S     H L + S V      YI+H H+ I ++  S   TR FPLL
Sbjct: 201 LLPTFRVTSHFSRYTSHHALHHTSRVASHTTRYISH-HALIPTSYVSSHITRCFPLL 256


>SB_18387| Best HMM Match : Utp12 (HMM E-Value=1.1e-06)
          Length = 457

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -3

Query: 203 PSIKLDTTLSHQKMFHHLKNLSVVLFPVVTYIAHTHSHIRST 78
           P I+L   LS+     HL NLS V F    Y+ H  + IRS+
Sbjct: 263 PPIRLPVMLSYL----HLTNLSSVSFQPSRYVLHVTTKIRSS 300


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 179 LSHQKMFHHLKNLSVVLFPVVTYIAHTHSHIRSTLFSPTRTFPLLFH 39
           ++H    HH    +    P +TY + TH HI +   +PT T P + H
Sbjct: 46  ITHASTTHHYIVHASTTHPYITYASTTHPHI-ARASTPT-THPYITH 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,127,139
Number of Sequences: 59808
Number of extensions: 445027
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)