Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30589
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm recept...    32   0.39 
Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm rec...    28   6.3  

>U41991-5|AAA83345.3|  345|Caenorhabditis elegans Seven tm receptor
           protein 1 protein.
          Length = 345

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -1

Query: 298 DRPQHFYPYKTLLVSLSAEIIYCMLTGISFSFLPLNWIQHYHTKKCSTILKTFQ 137
           D  + F P+ TL      ++++C + G S +   +N+I  Y   K S +LK+F+
Sbjct: 78  DSNKTFLPFWTLY---PIDLLFCGMLGCSMAIFTINFIYRYLVMKGSELLKSFE 128


>Z81489-2|CAB04011.2|  360|Caenorhabditis elegans Hypothetical
           protein C55A1.3 protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -1

Query: 280 YPYKTLLVSLSAEIIYCMLTGISFSFLPLNWIQHYHTKKCSTILKT 143
           +P K  L+     +++C L G+S +   ++++  Y     S  +KT
Sbjct: 94  FPVKCRLLKFEISVVFCSLFGMSMAIFAIHFVYRYLVMTGSHFIKT 139


>Z79602-2|CAB01889.1|  380|Caenorhabditis elegans Hypothetical
           protein K09E9.2 protein.
          Length = 380

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/75 (29%), Positives = 29/75 (38%)
 Frame = -3

Query: 272 QNSTCESLGRNNLLYAYGNFFLIPSIKLDTTLSHQKMFHHLKNLSVVLFPVVTYIAHTHS 93
           +N  C   G   +    GNF L P        SH    H L NL  V F      +HT +
Sbjct: 194 KNEGCRVYGTVKVAKVAGNFHLAPGDPHQAMRSH---VHDLHNLDPVKFDA----SHTVN 246

Query: 92  HIRSTLFSPTRTFPL 48
           H+      P + +PL
Sbjct: 247 HVSFGKSFPGKNYPL 261


>AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm
           receptor protein 204 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 235 YCMLTGISFSFLPLNWIQHYHTKKCSTILKTFQ 137
           YC   G S +   ++++  Y   K S +LKTFQ
Sbjct: 97  YCGFYGCSMAIFGIHFVYRYLVAKGSDLLKTFQ 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,847,822
Number of Sequences: 27780
Number of extensions: 351759
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)