Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30589
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41850.1 68415.m05172 endo-polygalacturonase, putative simila...    33   0.16 
At4g37520.1 68417.m05308 peroxidase 50 (PER50) (P50) (PRXR2) ide...    29   4.5  
At5g44770.1 68418.m05487 DC1 domain-containing protein contains ...    28   5.9  

>At2g41850.1 68415.m05172 endo-polygalacturonase, putative similar
           to endo-polygalacturonase [Arabidopsis thaliana]
           GI:2597824; contains PF00295: Glycosyl hydrolases family
           28 (polygalacturonases)
          Length = 433

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
 Frame = -3

Query: 548 KCTNR*EAL*KYIYWALNHINQYTMQEIT*HWCNLQVERHFMFSFSPQNIDI*YHMSYIL 369
           +CTN    +  ++ WAL   +      I+ +  +   +R    S   +  DI    S++ 
Sbjct: 3   RCTN---LVTVFLLWALLMFSWCKASRISPNVYDHSYKRFKSDSLIKRREDITGLRSFVR 59

Query: 368 ASCWSITLTITHNFDAKIQFNGQ*SPT-AFLSLQNSTCESLGRNNLLYAYGNFFLIPSIK 192
           AS  + T     +F AK   +G+   T AF++     C S G  NLL   GN +L+ SI+
Sbjct: 60  ASLRTPTTVSVSDFGAK--GDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQ 117

Query: 191 L 189
           L
Sbjct: 118 L 118


>At4g37520.1 68417.m05308 peroxidase 50 (PER50) (P50) (PRXR2)
           identical to SP|Q43731 Peroxidase 50 precursor (EC
           1.11.1.7) (Atperox P50) (PRXR2) (ATP9a)] {Arabidopsis
           thaliana}
          Length = 329

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 2   QNLNLLSRGLITNGKVTEKFELVKKVLIEYDCACVLCMSLREIILLKG 145
           +NL+L   G  T  K  E  + V     +  CA +L M+ R+++ L G
Sbjct: 94  ENLSLAGDGFDTVIKAKEALDAVPNCRNKVSCADILTMATRDVVNLAG 141


>At5g44770.1 68418.m05487 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 541

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 374 CNSCDIRCQYSVVRRKT*NASQLVNY 451
           CNSC +RC++S + ++T     LV Y
Sbjct: 507 CNSCKVRCKFSFLMKQT--LGDLVRY 530


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,178
Number of Sequences: 28952
Number of extensions: 310119
Number of successful extensions: 572
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)