Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30587
         (765 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   2.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   2.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   4.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.7  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 398 FSARIQEQSRRF*EAYVITSTCSSKVLPS 484
           F   +QE  + F   YV++ T S+  LPS
Sbjct: 156 FVKLLQEMKQAFGSKYVLSVTVSANPLPS 184


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 337 KCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYH 453
           KC  G + P+    I+E L   C++ G +  +     YH
Sbjct: 285 KCPPGFVGPRCEGDINECLSNPCSNAGTLDCVQLVNDYH 323


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 448 YHFHLLIKGLTLKACSVAQLALATHTH 528
           Y F LLIKG+     +  +  L TH H
Sbjct: 356 YDFELLIKGVYQVNPTKTRTNLPTHRH 382


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
 Frame = +3

Query: 465 HQRSYP--QSVQCGTACLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIR 638
           HQ++ P    V   T C  H     R  FNVH        S +   + D     F +R+ 
Sbjct: 139 HQKNSPYMDGVPFVTQCPIHPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFGPFIVRVP 198

Query: 639 E 641
           E
Sbjct: 199 E 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,576
Number of Sequences: 336
Number of extensions: 3920
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20546262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)