Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30587
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 111 1e-25
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 91 2e-19
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 33 0.059
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 27 2.2
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 27 3.9
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 26 6.8
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 26 6.8
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 25 9.0
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 111 bits (266), Expect = 1e-25
Identities = 48/73 (65%), Positives = 61/73 (83%)
Frame = +3
Query: 510 LGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPEN 689
LGHSYSRA+VKFNV+R DNMIIQ+IA+LDQLDKD+NTF+MR++EWYS+HFPEL IV +N
Sbjct: 150 LGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDKDINTFAMRMKEWYSWHFPELSKIVGDN 209
Query: 690 HLYTKCAEFIKDR 728
+ Y + D+
Sbjct: 210 YKYAVIVTLVGDK 222
Score = 62.1 bits (144), Expect = 8e-11
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +1
Query: 256 NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAI-SEALEIQCTHTGAVPEI 432
N +SEG+L + L FLE LPK K+ K +LGV D L +I SE I+C + ++
Sbjct: 64 NDISEGVLNDFLKNFLELNLPKASKKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDL 123
Query: 433 LRGIRYHFHLLIKGLTLKACSVAQLAL 513
LRGIR+H L+K L+ AQL L
Sbjct: 124 LRGIRFHGDKLLKQLSPGDFERAQLGL 150
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 91.1 bits (216), Expect = 2e-19
Identities = 38/89 (42%), Positives = 61/89 (68%)
Frame = +3
Query: 480 PQSVQCGTACLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHF 659
P + + L HS SR ++KF+ +VD MI+Q+IALLD LDK++NT++MR+REWY +HF
Sbjct: 133 PSDLNAMSLGLSHSLSRHKLKFSPDKVDTMIVQAIALLDDLDKELNTYAMRVREWYGWHF 192
Query: 660 PELVSIVPENHLYTKCAEFIKDRRPCAKS 746
PE+ I+ +N Y + + + R C+++
Sbjct: 193 PEMGKIIQDNLAYARVIKAMGMRTKCSET 221
Score = 43.6 bits (98), Expect = 3e-05
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 256 NAVSEGILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISE--ALEIQCTHTGAVPE 429
+A+ EG + L+ LEG L K TL V DPKLG AI++ LE + +V +
Sbjct: 60 SALVEGKVSSKLSSLLEG-LSDSKSS---TLVVADPKLGNAINKLPGLEFEIISDSSVQD 115
Query: 430 ILRGIRYHFHLLIKGLTLKACSVAQLALA 516
+ RGIR H LI GL + L L+
Sbjct: 116 LYRGIREHLSSLISGLAPSDLNAMSLGLS 144
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 32.7 bits (71), Expect = 0.059
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +3
Query: 564 NMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 704
++I+ S ++ ++D ++ ++EWY FPEL S+V Y K
Sbjct: 118 HLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCK 164
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +2
Query: 92 HSAGFALFRVAEFEEL---AAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIV 241
HS G + FR+ + EEL + P+V + Q + A L+ F K IV
Sbjct: 138 HSVGVSNFRIPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKGIIV 190
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -2
Query: 317 GRPPSRNRFKSSGRIPSDTALYFPKQRSPTCVVEKLLKSQQH*NVANL 174
G+ +N ++S R P D ++FP + S TC EK +S +H + N+
Sbjct: 134 GKIDLKNWNEASRRFPYDYKIFFPNKCS-TCKFEKPARS-KHCRLCNI 179
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 25.8 bits (54), Expect = 6.8
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +1
Query: 226 QVGDRCFGKYNAVSEGILPEDLN---LFLEGGLPKRKKRSK 339
Q+ + F ++ S+G+ PEDL FL +P + SK
Sbjct: 613 QLKSKVFNRFQLSSQGLTPEDLTEDVPFLHFNVPSSRPNSK 653
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 227 CVVEKLLKSQQH*NVANLSRTLRPEAGKPLTL 132
CV+ L+ ++H ++ L + PEAGK + L
Sbjct: 44 CVILGTLEFRKHRSIRRLQSMIVPEAGKSIQL 75
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = -2
Query: 302 RNRFKSSGRIPSDTALYFPKQRSPTCVVEKLLKSQQH*NVANLSRTLRPEAGKPLTLQIQ 123
RNR +G P SPT + KS ++A+ + RP KPL +++
Sbjct: 259 RNREGGNGSYFDGPLTASPTPSSPTGTPNSMSKSPSLSSLASTGASYRPGPSKPLVSRVR 318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,135
Number of Sequences: 5004
Number of extensions: 67423
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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