Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30587
(765 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 122 2e-28
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 102 4e-22
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 93 2e-19
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 93 2e-19
04_03_0055 + 10299539-10299703,10300042-10300746,10301025-103011... 29 4.1
08_01_0331 + 2966362-2966477,2966561-2966924,2966949-2967050,296... 29 5.4
12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 28 7.1
05_04_0432 + 21178662-21178798,21178973-21179033,21179260-211793... 28 9.4
01_05_0604 - 23583244-23584989 28 9.4
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 122 bits (295), Expect = 2e-28
Identities = 52/78 (66%), Positives = 68/78 (87%)
Frame = +3
Query: 510 LGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPEN 689
LGHSYSRA+VKFNV+RVDNM+IQ+I LLD LDKD+N+FSMR+REW+ +HFPELV IV +N
Sbjct: 151 LGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWFGWHFPELVKIVNDN 210
Query: 690 HLYTKCAEFIKDRRPCAK 743
++Y K A++IKD+ A+
Sbjct: 211 YIYAKLADYIKDKSELAE 228
Score = 75.4 bits (177), Expect = 5e-14
Identities = 41/88 (46%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Frame = +1
Query: 256 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 429
NA+SEGI+ ++L FLE LPK K K++K +LGV++PK+G+ ISE I C V E
Sbjct: 64 NAISEGIMTDELRSFLELNLPKPKEGKKAKYSLGVVEPKVGSHISEVTGIPCQSNEFVQE 123
Query: 430 ILRGIRYHFHLLIKGLTLKACSVAQLAL 513
+LRG+R HF I L AQL L
Sbjct: 124 LLRGVRLHFDRFISELKKSDLEKAQLGL 151
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 102 bits (244), Expect = 4e-22
Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 20/108 (18%)
Frame = +3
Query: 480 PQSVQCGTACLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRI-------- 635
P ++ LGHSYSRA+VKFNV+RVDNM+IQ+I LLD LDKD+N+FSMR+
Sbjct: 179 PTDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVSLFFPLFY 238
Query: 636 ------------REWYSYHFPELVSIVPENHLYTKCAEFIKDRRPCAK 743
REWYS+HFPELV IV +N++Y+K A+F+ ++ A+
Sbjct: 239 AMINSGGESLPPREWYSWHFPELVKIVNDNYVYSKIAKFVVNKSDLAE 286
Score = 70.5 bits (165), Expect = 1e-12
Identities = 37/76 (48%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = +1
Query: 256 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 429
NA+SEGI+ ++L FLE LPK K K++K ++GV++PK+G+ ISEA I C V E
Sbjct: 64 NAISEGIMTDELRSFLELNLPKVKEGKKAKYSVGVMEPKVGSHISEATGIPCQCNEFVQE 123
Query: 430 ILRGIRYHFHLLIKGL 477
+LRG+R HF I L
Sbjct: 124 LLRGVRLHFDHFIDQL 139
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +2
Query: 77 YVLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVAL 247
Y+LFE ++G+ALF +E+ + SV +LQRF+ V L F P SA+ AL
Sbjct: 4 YLLFESASGYALFHAHGVDEIGQGVDAARASVLELQRFSKAVKLAGFSPFSSAVDAL 60
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 93.5 bits (222), Expect = 2e-19
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = +3
Query: 510 LGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPEN 689
L HS SR ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REWY +HFPEL IV +N
Sbjct: 140 LSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADN 199
Query: 690 HLYTKCAEFIKDR 728
Y K + + DR
Sbjct: 200 IQYAKVVKMMGDR 212
Score = 49.2 bits (112), Expect = 4e-06
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 343 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHLLIKGLTLKACSVAQLALA 516
TL V D KLG AI E L+I C H AV E++RG+R LI GL + L L+
Sbjct: 84 TLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLS 141
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 80 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENTT 259
VLFE AGFALF+V + +L + + + T VV L AF ++ AL T
Sbjct: 3 VLFETPAGFALFKVLDEGKLDK-VEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAAT 61
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 93.5 bits (222), Expect = 2e-19
Identities = 40/73 (54%), Positives = 54/73 (73%)
Frame = +3
Query: 510 LGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPEN 689
L HS SR ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REWY +HFPEL IV +N
Sbjct: 140 LSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVADN 199
Query: 690 HLYTKCAEFIKDR 728
Y K + + DR
Sbjct: 200 IQYAKVVKMMGDR 212
Score = 49.2 bits (112), Expect = 4e-06
Identities = 26/58 (44%), Positives = 32/58 (55%)
Frame = +1
Query: 343 TLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHLLIKGLTLKACSVAQLALA 516
TL V D KLG AI E L+I C H AV E++RG+R LI GL + L L+
Sbjct: 84 TLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLS 141
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 80 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENTT 259
VLFE AGFALF+V + +L + + + T VV L AF ++ AL T
Sbjct: 3 VLFETPAGFALFKVLDEGKLDK-VEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAAT 61
>04_03_0055 +
10299539-10299703,10300042-10300746,10301025-10301116,
10302896-10303313
Length = 459
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 440 PLKISGTAPVCVH*ISKASLMAAPSLGSSTPSVHFDRFFLFGRPPSRNRFKSSGR 276
PL + T+P+ + +++P S PS H R F+F + P+ N + GR
Sbjct: 324 PLVLHATSPLRLLCTLHGPRLSSPK-PSHQPSTHLPRCFIFPQNPTSNELELMGR 377
>08_01_0331 +
2966362-2966477,2966561-2966924,2966949-2967050,
2967127-2967209,2967306-2967422,2968085-2968187,
2968259-2968928,2969239-2969393,2969529-2969580,
2969734-2969825
Length = 617
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 311 PPSRNRFKSSGRIPSDTALYFPKQRSPT 228
PP+R F+S+G P+ TA P + PT
Sbjct: 68 PPTRLFFQSTGACPTQTASSSPSRHEPT 95
>12_02_1165 +
26633371-26633679,26635183-26635276,26635732-26635822,
26636112-26636199,26636300-26636341,26636648-26636809,
26636915-26637094,26637280-26637447,26637977-26638195
Length = 450
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 80 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAF 217
+LFE +GFA+FRV++ L + + S TD + VV I F
Sbjct: 172 MLFETPSGFAMFRVSDV--LFRYPEDIWSSFTDPHTAHQVVRTIGF 215
>05_04_0432 +
21178662-21178798,21178973-21179033,21179260-21179339,
21179650-21179794,21180411-21180620,21180956-21181004,
21181199-21181326
Length = 269
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +2
Query: 200 VTLIAFQPHKSAIVALENTTRYLKVFFLRI*IYSSKGVFQKGRNGQNAHSVYW 358
+TLI Q + I +E FLR I S +GV + G GQ H +YW
Sbjct: 187 MTLIKLQK-RFGIAKMEGKAYVGGDLFLRGCIGSIRGVRRHGGQGQMLHYLYW 238
>01_05_0604 - 23583244-23584989
Length = 581
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 342 HTRCTGSQARSSHQRGLGNSVHAYRSSPGDFERHTLSL--PLAHQRSY--PQSVQCGTAC 509
+T +G Q ++ ++H R+S GD + H LSL P A+ SY P Q G+
Sbjct: 37 NTETSGVQETTAVASKCVPTIHFVRASSGDTDHHRLSLFSPPAYCTSYYPPLPPQPGSLA 96
Query: 510 LGHSYSRARVKFN 548
+R + N
Sbjct: 97 TNQIVARLMAQMN 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,425,136
Number of Sequences: 37544
Number of extensions: 442248
Number of successful extensions: 1143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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