Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30587
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)                137   1e-32
SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_34695| Best HMM Match : CXC (HMM E-Value=4.7)                       32   0.44 
SB_49059| Best HMM Match : UPF0175 (HMM E-Value=5.9)                   30   2.3  
SB_36645| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2)                       28   7.2  
SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)                      28   7.2  
SB_21102| Best HMM Match : SH2 (HMM E-Value=6.7)                       28   9.5  

>SB_37342| Best HMM Match : NOSIC (HMM E-Value=5.4e-33)
          Length = 300

 Score =  137 bits (331), Expect = 1e-32
 Identities = 60/74 (81%), Positives = 69/74 (93%)
 Frame = +3

Query: 510 LGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPEN 689
           LGHSYSRA+VKFN+HRVDNMIIQSIALLDQLDKD+NTFSMRIREWYSYHFPELV IV +N
Sbjct: 82  LGHSYSRAKVKFNIHRVDNMIIQSIALLDQLDKDINTFSMRIREWYSYHFPELVKIVNDN 141

Query: 690 HLYTKCAEFIKDRR 731
           ++Y K A++IK R+
Sbjct: 142 YMYAKVAKYIKSRK 155



 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 42/80 (52%), Positives = 52/80 (65%)
 Frame = +1

Query: 274 ILPEDLNLFLEGGLPKRKKRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYH 453
           I+ +DL  F+E  +P  KK+SK  LGV D K+GAAI E+L I C   G + E+LRGIR H
Sbjct: 3   IIHDDLKAFVEANVPTGKKKSKVLLGVADSKIGAAIQESLNICCDSGGVILEVLRGIRMH 62

Query: 454 FHLLIKGLTLKACSVAQLAL 513
           F  +IKGLT    S AQL L
Sbjct: 63  FDKMIKGLTGAMASKAQLGL 82


>SB_36081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 33/60 (55%), Positives = 45/60 (75%)
 Frame = +3

Query: 525 SRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLYTK 704
           SR ++KF+  +VD MI+Q+I+LLD LDK++N + MR REWY +HFPEL  IV +N  Y K
Sbjct: 58  SRYKLKFSPDKVDTMIVQAISLLDDLDKELNNYVMRCREWYGWHFPELGKIVTDNLAYAK 117


>SB_34695| Best HMM Match : CXC (HMM E-Value=4.7)
          Length = 186

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 22/86 (25%), Positives = 33/86 (38%)
 Frame = +3

Query: 285 GFESIPRRGSSKKEETVKMHTRCTGSQARSSHQRGLGNSVHAYRSSPGDFERHTLSLPLA 464
           GF+ +P R  SK     K+H      +A +   R      HA  S  G+   HT S    
Sbjct: 107 GFDRVPSRRQSKDSAPAKVHAE---GEAPAPSPR-----THAAHSMSGEKGDHTPSRRGC 158

Query: 465 HQRSYPQSVQCGTACLGHSYSRARVK 542
               +P+ + C   C      R R++
Sbjct: 159 RHSRWPRRITCSDDCFAFDEPRTRLR 184


>SB_49059| Best HMM Match : UPF0175 (HMM E-Value=5.9)
          Length = 159

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 489 VQCGTACLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDV 614
           V CGT  L  S +RAR   ++H  DN  IQ    + ++ KD+
Sbjct: 18  VYCGTT-LRSSLNRARKVVDLHTTDNKEIQKDMTVQEIQKDM 58


>SB_36645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 24/85 (28%), Positives = 35/85 (41%)
 Frame = +3

Query: 429 DFERHTLSLPLAHQRSYPQSVQCGTACLGHSYSRARVKFNVHRVDNMIIQSIALLDQLDK 608
           + + H L   +    S    +QCG  CLG+   R    +N+ R D +      LL+   K
Sbjct: 38  EIDGHALVNHVIESCSVTSPMQCGQGCLGNPSCR---WYNI-RHDTV----CELLNTTKK 89

Query: 609 DVNTFSMRIREWYSYHFPELVSIVP 683
               + M+      YH PEL  I P
Sbjct: 90  SAKEYLMKHSGSNHYHDPELSGIYP 114


>SB_3535| Best HMM Match : WD40 (HMM E-Value=3.2)
          Length = 231

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = +2

Query: 170 VTDLQRFNAVVTLIAFQPHKSAIVALENTTRYLKVF 277
           VT L R+N+ VT +AFQP K+  +A+    R + V+
Sbjct: 2   VTTLPRYNSAVTAMAFQP-KTNHLAMVCANRQIYVY 36


>SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)
          Length = 475

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 630 RIREWYSYHFPELVSIVPENHLYTKCAEFIKDRRPCAKSH 749
           RI+ WY   +P+  + +P  +L   C +F+K    C K H
Sbjct: 203 RIKPWYFSPYPQEFTNLPMVYLCDFCLKFVKSFH-CLKRH 241


>SB_21102| Best HMM Match : SH2 (HMM E-Value=6.7)
          Length = 261

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 250 KYNAVSEGILPEDLNLFLEGGLPK 321
           K    + G+L EDL +  EGGLPK
Sbjct: 142 KTRVYTRGLLGEDLRMRTEGGLPK 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,128,380
Number of Sequences: 59808
Number of extensions: 533891
Number of successful extensions: 1256
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)