Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30587
(765 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g12860.1 68416.m01603 nucleolar protein Nop56, putative simil... 118 3e-27
At1g56110.1 68414.m06443 nucleolar protein Nop56, putative simil... 117 7e-27
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron... 93 1e-19
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 93 2e-19
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron... 64 1e-10
At1g77200.1 68414.m08992 AP2 domain-containing transcription fac... 32 0.36
At1g73210.2 68414.m08473 expressed protein 28 5.9
At1g73210.1 68414.m08472 expressed protein 28 5.9
>At3g12860.1 68416.m01603 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 499
Score = 118 bits (285), Expect = 3e-27
Identities = 50/80 (62%), Positives = 67/80 (83%)
Frame = +3
Query: 510 LGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPEN 689
L HSYSRA+VKFNV+RVDNM+IQ+I +LD LDKD+N+F+MR+REWYS+HFPELV IV +N
Sbjct: 151 LAHSYSRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRVREWYSWHFPELVKIVNDN 210
Query: 690 HLYTKCAEFIKDRRPCAKSH 749
+LY K ++ I D+ ++ H
Sbjct: 211 YLYAKVSKIIVDKSKLSEEH 230
Score = 75.4 bits (177), Expect = 4e-14
Identities = 43/89 (48%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Frame = +1
Query: 256 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 429
NAVSEG + ++L FLE LPK K K+ K +LGV +PK+G+ I EA +I C V E
Sbjct: 64 NAVSEGYMSDELRSFLELNLPKVKEGKKPKFSLGVSEPKIGSCIFEATKIPCQSNEFVHE 123
Query: 430 ILRGIRYHFHLLIKGLTLKACSVAQLALA 516
+LRG+R HF IK L AQL LA
Sbjct: 124 LLRGVRQHFDRFIKDLKPGDLEKAQLGLA 152
>At1g56110.1 68414.m06443 nucleolar protein Nop56, putative similar
to XNop56 protein [Xenopus laevis] GI:14799394; contains
Pfam profile PF01798: Putative snoRNA binding domain
Length = 522
Score = 117 bits (282), Expect = 7e-27
Identities = 49/80 (61%), Positives = 66/80 (82%)
Frame = +3
Query: 510 LGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPEN 689
L HSYSRA+VKFNV+RVDNM+IQ+I +LD LDKD+N+F+MR+REWYS+HFPELV IV +N
Sbjct: 151 LAHSYSRAKVKFNVNRVDNMVIQAIFMLDTLDKDINSFAMRVREWYSWHFPELVKIVNDN 210
Query: 690 HLYTKCAEFIKDRRPCAKSH 749
+LY + ++ I D+ + H
Sbjct: 211 YLYARVSKMIDDKSKLTEDH 230
Score = 74.5 bits (175), Expect = 7e-14
Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Frame = +1
Query: 256 NAVSEGILPEDLNLFLEGGLPKRK--KRSKCTLGVLDPKLGAAISEALEIQCTHTGAVPE 429
NAVSEG++ ++L FLE LPK K K+ K +LG+ +PKLG+ I EA +I C V E
Sbjct: 64 NAVSEGVMTDELRSFLELNLPKVKEGKKPKFSLGLAEPKLGSHIFEATKIPCQSNEFVLE 123
Query: 430 ILRGIRYHFHLLIKGLTLKACSVAQLALA 516
+LRG+R HF IK L +QL LA
Sbjct: 124 LLRGVRQHFDRFIKDLKPGDLEKSQLGLA 152
>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 93.5 bits (222), Expect = 1e-19
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +3
Query: 510 LGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPEN 689
L HS +R ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REWY +HFPEL I+ +N
Sbjct: 141 LSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIISDN 200
Query: 690 HLYTKCAEFIKDRRPCAK 743
LY K + + +R AK
Sbjct: 201 ILYAKSVKLMGNRVNAAK 218
Score = 54.0 bits (124), Expect = 1e-07
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Frame = +1
Query: 238 RCFGKYNAVSEGILPEDLNLFLEGGLPK--RK-KRSKC---TLGVLDPKLGAAISEALEI 399
+ F K++ SE + E + LEG K RK ++ C TL V D KLG I E L+I
Sbjct: 46 KAFEKFDNTSEAL--EAVAKLLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKI 103
Query: 400 QCTHTGAVPEILRGIRYHFHLLIKGL 477
C H AV E+LRG+R F LI GL
Sbjct: 104 DCIHNNAVMELLRGVRSQFTELISGL 129
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 80 VLFEHSAGFALFRVAEFEELAAFLPQVEESVTDLQRFNAVVTLIAFQPHKSAIVALENTT 259
VL+E +AGFALF+V + ++A +E T +V L AF+ + ALE
Sbjct: 4 VLYETAAGFALFKVKDEGKMANVEDLCKEFDTP-DSARKMVKLKAFEKFDNTSEALEAVA 62
Query: 260 RYLK 271
+ L+
Sbjct: 63 KLLE 66
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 92.7 bits (220), Expect = 2e-19
Identities = 40/78 (51%), Positives = 57/78 (73%)
Frame = +3
Query: 510 LGHSYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPEN 689
L HS +R ++KF+ +VD MIIQ+I LLD LDK++NT++MR+REW+ +HFPEL IV +N
Sbjct: 140 LSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWFGWHFPELAKIVQDN 199
Query: 690 HLYTKCAEFIKDRRPCAK 743
LY K + + +R AK
Sbjct: 200 ILYAKAVKLMGNRINAAK 217
Score = 50.4 bits (115), Expect = 1e-06
Identities = 40/101 (39%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Frame = +1
Query: 208 NSFSTTQVGDR-----CFGKYNAVSEGILPEDLNLFLEGGLPK--RK-KRSKC---TLGV 354
N FST ++ + F K++ +E + E + LEG K RK ++ C TL V
Sbjct: 30 NEFSTAKLARKMVKLVAFDKFDNTAEAL--EAVAKLLEGTPSKGLRKFLKANCVGETLAV 87
Query: 355 LDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHLLIKGL 477
D KLG I E L+I C H AV E+LRGIR LI GL
Sbjct: 88 ADSKLGNIIKEKLKIVCVHNNAVMELLRGIRSQLTELISGL 128
>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 445
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +3
Query: 519 SYSRARVKFNVHRVDNMIIQSIALLDQLDKDVNTFSMRIREWYSYHFPELVSIVPENHLY 698
S+ AR K + MII SI+LLD LDK++NT++ + E Y HFPEL +IV +N LY
Sbjct: 113 SHILARYKLKITSDKTMIILSISLLDDLDKELNTYTTSVCELYGLHFPELANIVQDNILY 172
Query: 699 TKCAEFIKDR 728
K + + +R
Sbjct: 173 AKVVKLMGNR 182
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +1
Query: 346 LGVLDPKLGAAISEALEIQCTHTGAVPEILRGIRYHFHLLIKGL 477
L V DPKLG I+E L+I+C H AV E+LRG+R L+ GL
Sbjct: 57 LAVADPKLGDIITEKLDIECVHNDAVMELLRGVRSQLTELLSGL 100
>At1g77200.1 68414.m08992 AP2 domain-containing transcription factor
TINY, putative similar to transcription factor TINY
(GI:1246403) [Arabidopsis thaliana] similar to TINY
(GP:1246403) [Arabidopsis thaliana] similar to TINY
(GP:1246403) [Arabidopsis thaliana]
Length = 244
Score = 32.3 bits (70), Expect = 0.36
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 119 VAEFEELAAFLPQ-VEESVTDLQRFNAVVTLIAFQPHKSAIVALENTT 259
V F ELA +LP+ S D+Q AV + F P S++V + TT
Sbjct: 95 VLNFPELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTT 142
>At1g73210.2 68414.m08473 expressed protein
Length = 312
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 448 NVCLSKSPGLLLYACTEFPRPR*WLLLAWDPVHRV 344
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 172 NVLVEKYPGLMTLRSVDMS-PASWMAVAWYPIYHI 205
>At1g73210.1 68414.m08472 expressed protein
Length = 314
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 448 NVCLSKSPGLLLYACTEFPRPR*WLLLAWDPVHRV 344
NV + K PGL+ + P W+ +AW P++ +
Sbjct: 174 NVLVEKYPGLMTLRSVDMS-PASWMAVAWYPIYHI 207
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,558,510
Number of Sequences: 28952
Number of extensions: 357886
Number of successful extensions: 965
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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