Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30586
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    49   8e-07
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    29   0.72 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.3  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    27   3.9  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   6.7  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    26   6.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.9  

>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 23/58 (39%), Positives = 33/58 (56%)
 Frame = +1

Query: 259 DYSKLTPERRRHNFTLAFKIADEKAGIYPLLDVEDMVTMRKPDWKCVFTYVQSIHRRF 432
           DY+KL  +  R N  LAF IA +  GI  L++VED+  + +PD + + TYV      F
Sbjct: 172 DYNKLDKKNHRANMQLAFDIAQKSIGIPRLIEVEDVCDVDRPDERSIMTYVAEYFHAF 229



 Score = 38.7 bits (86), Expect = 9e-04
 Identities = 14/26 (53%), Positives = 20/26 (76%)
 Frame = +2

Query: 176 VKLENFSTSWADGLAFCALLHHFLPD 253
           V +++F+ SW +GLAFCAL+H   PD
Sbjct: 144 VDVQDFTRSWTNGLAFCALIHQHRPD 169


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 212 GLAFCALLHHFLPDGLTTQN 271
           GLA CA+ +HFLP   TTQN
Sbjct: 408 GLALCAIAYHFLPAD-TTQN 426


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = -2

Query: 747 WT*HTIRITFL*HYRLTTPHQ-RRPSLSTPAPSHTN 643
           WT   + I FL  YR +TP   +  S STP    TN
Sbjct: 29  WTLKNVLILFLVQYRASTPSALQTSSFSTPVEKKTN 64


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +1

Query: 298 FTLAFKIADEKAGIYPLLDVEDMVTMRKPDWKCVFTYVQSIHRRF 432
           F +  K    +A  YP ++   MV  R  D   V + + SI RRF
Sbjct: 84  FAIGCKNVAYEASQYPRMNATFMVLARNSDLDGVLSSMNSIERRF 128


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 360 RYGDDAQT*LEVRLHLCPVHPPPVQRSELI 449
           R  D A T L++ LH+   HPP  ++ + +
Sbjct: 111 RVFDSASTPLKINLHIIYYHPPQPRKMQFL 140


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 131 VPAAREAKLNKQSQNVKLENFSTSWADGLAFCALL 235
           +P      LNK S++V LE F  S  +    CAL+
Sbjct: 58  IPQLIHLVLNKDSESVALEEFIISQCEQNTQCALI 92


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 143  REAKLNKQSQNVKLENFSTSWADGLAFCALLHHFLPDG 256
            RE   N   Q V L   +   +    FC  +HH L DG
Sbjct: 4608 RELVTNTTLQEVPLRIATIETSGKFVFCLTIHHALYDG 4645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,765
Number of Sequences: 5004
Number of extensions: 58058
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)