Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30586
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0007 - 15038268-15039062,15039177-15039711,15039887-150399...    29   3.1  
10_02_0071 + 4928899-4929465                                           28   7.1  
04_03_1046 + 21974577-21975126,21975620-21975894,21976120-219762...    28   7.1  
03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178     28   7.1  

>01_04_0007 -
           15038268-15039062,15039177-15039711,15039887-15039936,
           15040376-15040446,15040683-15040731
          Length = 499

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 247 AGRFDYSKLTPERRRHNFTLAFKIADEKAGIYPLLD 354
           AG + Y ++TP RR H F    K+A    G Y +L+
Sbjct: 350 AGDYVYLRVTPLRRVHRFQTKGKLAPRFMGPYKILE 385


>10_02_0071 + 4928899-4929465
          Length = 188

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 699 TTPHQRRPSLSTPAPS 652
           T+PH R+P LS PAPS
Sbjct: 160 TSPHLRQPRLSPPAPS 175


>04_03_1046 +
           21974577-21975126,21975620-21975894,21976120-21976284,
           21976352-21976441,21977723-21978097
          Length = 484

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
 Frame = +1

Query: 196 DELGGRSRVLRFTT-SLPAGRFDYSKLTPERRRHNFTLAFKIADEKAGIYPLLDVEDMVT 372
           DE+GG +      + S P    D  KL   R            D +A    +LD  D V 
Sbjct: 254 DEVGGETSWKNMLSDSAPTYLQDILKLFENRVVLFENKTSSTQDRQAQRKKMLDAVDFVV 313

Query: 373 MR---KPDWKCVFTYVQSIHRRFKDQN 444
                KP    +FT +Q +H R KD N
Sbjct: 314 SSNHGKPFSNQLFTQIQEVHHRQKDAN 340


>03_05_0127 + 21069312-21069668,21070023-21072830,21072975-21073178
          Length = 1122

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 425  RWMDWT*VKTHFQSGLRIVTISSTSSKGYMP-AFSSAILKASVKLCRLLSGV 273
            +W++W+ V       LR++ I  +    Y+P   SS++ K  +K C  L+ +
Sbjct: 881  KWVEWSQVGQDDFPSLRLLKIKDSHELRYLPQELSSSLTKLVIKDCSKLASL 932


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,550,447
Number of Sequences: 37544
Number of extensions: 395510
Number of successful extensions: 966
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)