Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30584
(765 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos t... 86 1e-15
UniRef50_UPI0000F33B2A Cluster: UPI0000F33B2A related cluster; n... 79 1e-13
UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse tr... 77 5e-13
UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse tr... 73 6e-12
UniRef50_UPI0000F32779 Cluster: UPI0000F32779 related cluster; n... 69 1e-10
UniRef50_UPI0000E4635A Cluster: PREDICTED: similar to reverse tr... 67 4e-10
UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria gla... 60 6e-08
UniRef50_UPI0000E4A090 Cluster: PREDICTED: similar to reverse tr... 52 2e-05
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea... 52 2e-05
UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles g... 48 2e-04
UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles g... 47 6e-04
UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to endonuclea... 46 0.001
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea... 46 0.001
UniRef50_UPI00015557D7 Cluster: PREDICTED: similar to reverse tr... 45 0.002
UniRef50_Q1ZBI5 Cluster: Putative uncharacterized protein; n=1; ... 45 0.002
UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles g... 44 0.003
UniRef50_UPI0000E4A747 Cluster: PREDICTED: similar to endonuclea... 43 0.010
UniRef50_UPI0000E495D7 Cluster: PREDICTED: similar to endonuclea... 43 0.010
UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Re... 42 0.013
UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotei... 41 0.029
UniRef50_UPI0000D57951 Cluster: PREDICTED: similar to RNA-direct... 41 0.029
UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|R... 40 0.068
UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9; Obtectomera... 39 0.12
UniRef50_UPI0000D57919 Cluster: PREDICTED: hypothetical protein,... 39 0.16
UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase fr... 39 0.16
UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1... 38 0.21
UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles g... 38 0.27
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile... 38 0.36
UniRef50_UPI00015B4771 Cluster: PREDICTED: similar to secreted p... 37 0.48
UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster subgro... 37 0.63
UniRef50_A6R0B1 Cluster: Predicted protein; n=9; Ajellomyces cap... 36 0.83
UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like p... 36 1.1
UniRef50_UPI0000F329BA Cluster: LOC534369 protein; n=1; Bos taur... 36 1.1
UniRef50_O18558 Cluster: Lian-Aa1 retrotransposon protein; n=1; ... 36 1.1
UniRef50_UPI00015B43F6 Cluster: PREDICTED: similar to pol-like p... 35 1.9
UniRef50_Q9Y026 Cluster: NL1Tc; n=2; Trypanosoma cruzi|Rep: NL1T... 35 1.9
UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila melanogast... 35 1.9
UniRef50_UPI0000E4771B Cluster: PREDICTED: similar to ependymin-... 35 2.5
UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:... 35 2.5
UniRef50_UPI0000F34067 Cluster: UPI0000F34067 related cluster; n... 34 3.4
UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Re... 34 4.4
UniRef50_Q868R6 Cluster: Reverse transcriptase; n=1; Anopheles g... 34 4.4
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-... 33 5.9
UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori... 33 5.9
UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3.... 33 7.8
UniRef50_Q4QQE9 Cluster: Endonuclease-reverse transcriptase; n=1... 33 7.8
UniRef50_O46184 Cluster: Reverse transcriptase; n=2; Drosophila ... 33 7.8
>UniRef50_O97916 Cluster: Reverse transcriptase-like; n=70; Bos
taurus|Rep: Reverse transcriptase-like - Bos taurus
(Bovine)
Length = 335
Score = 85.8 bits (203), Expect = 1e-15
Identities = 36/83 (43%), Positives = 57/83 (68%)
Frame = +1
Query: 4 KKIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHE 183
+++DAFE+W WRR+LR+PWTA R+ +SIL+++ L + + + +FGH+MR +
Sbjct: 213 QRMDAFELWCWRRLLRVPWTARRSTQSILKEISPGCSLEGLMLKLKLQYFGHLMRRA-DS 271
Query: 184 LEKLIITGRIEGKRAVGRTPARW 252
LEK ++ G+IEG+R GR RW
Sbjct: 272 LEKTLMLGKIEGRRRRGRQRMRW 294
>UniRef50_UPI0000F33B2A Cluster: UPI0000F33B2A related cluster; n=3;
Bos taurus|Rep: UPI0000F33B2A UniRef100 entry - Bos
Taurus
Length = 253
Score = 79.0 bits (186), Expect = 1e-13
Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Frame = +1
Query: 4 KKIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHE 183
+K D FE+W WRR+LR+PWTA R+N+SIL+++ L + + + +FGH S
Sbjct: 135 RKTDVFELWCWRRLLRVPWTAGRSNQSILKEISPGISLEGMMLKLKLQYFGHRRADS--- 191
Query: 184 LEKLIITGRIEGKRAVGRTPARW--SI*QEKHSVVVCTMQS 300
LEK ++ G+IEGKR G+ +W I ++CT ++
Sbjct: 192 LEKTLMLGKIEGKRRRGQKRMKWLDGITNSMDMSLICTSEN 232
>UniRef50_UPI0000F1FDAD Cluster: PREDICTED: similar to reverse
transcriptase-like; n=1; Danio rerio|Rep: PREDICTED:
similar to reverse transcriptase-like - Danio rerio
Length = 249
Score = 77.0 bits (181), Expect = 5e-13
Identities = 35/83 (42%), Positives = 51/83 (61%)
Frame = +1
Query: 4 KKIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHE 183
+KIDAFE+W WR+M+RIPW A TN++IL ++ L ++ +SFFGHIM++ +
Sbjct: 145 RKIDAFELWCWRQMMRIPWAAKITNKTILERVKQNVSLEGKITKQRLSFFGHIMQT--NS 202
Query: 184 LEKLIITGRIEGKRAVGRTPARW 252
+E G + G R GR RW
Sbjct: 203 METAFTLGAVSGSRRRGRQRTRW 225
>UniRef50_UPI0000E48997 Cluster: PREDICTED: similar to reverse
transcriptase-like; n=6; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to reverse
transcriptase-like - Strongylocentrotus purpuratus
Length = 415
Score = 73.3 bits (172), Expect = 6e-12
Identities = 34/82 (41%), Positives = 48/82 (58%)
Frame = +1
Query: 7 KIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHEL 186
+I A EMW WR+ML+I W RTN S+L++L+ + L + +FGHI+R S L
Sbjct: 287 RIMAAEMWFWRKMLKISWKDKRTNLSVLQELNTERDLLGKVARLKLGYFGHILRGSGSPL 346
Query: 187 EKLIITGRIEGKRAVGRTPARW 252
II ++EGKR GR +W
Sbjct: 347 AAQIIESQVEGKRKRGRQRKQW 368
>UniRef50_UPI0000F32779 Cluster: UPI0000F32779 related cluster; n=9;
Bos taurus|Rep: UPI0000F32779 UniRef100 entry - Bos
Taurus
Length = 263
Score = 69.3 bits (162), Expect = 1e-10
Identities = 34/79 (43%), Positives = 50/79 (63%)
Frame = +1
Query: 4 KKIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHE 183
++IDAFE+W WRR+LR+PWT R+N+SIL+++ L I + + +FGH+M+S
Sbjct: 139 QRIDAFELWCWRRLLRVPWTERRSNQSILKEISPGISLEEIMLKLKLQYFGHLMQSV-DS 197
Query: 184 LEKLIITGRIEGKRAVGRT 240
LEK GR G+ G T
Sbjct: 198 LEK-TDAGRYWGQEERGTT 215
>UniRef50_UPI0000E4635A Cluster: PREDICTED: similar to reverse
transcriptase-like; n=1; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to reverse
transcriptase-like - Strongylocentrotus purpuratus
Length = 281
Score = 67.3 bits (157), Expect = 4e-10
Identities = 31/77 (40%), Positives = 48/77 (62%)
Frame = +1
Query: 4 KKIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHE 183
K++DAFEMW +RR+L++ W +TN +L ++ + ER + +FGHI+R S
Sbjct: 203 KRVDAFEMWCYRRLLQVSWKDKKTNVWVLEKIRTDLTIKKGIMERKLYYFGHIVRRS-EG 261
Query: 184 LEKLIITGRIEGKRAVG 234
+EK I+ G +EGKR G
Sbjct: 262 IEKQILQGAVEGKRGRG 278
>UniRef50_A3FMR3 Cluster: Pol-like protein; n=2; Biomphalaria
glabrata|Rep: Pol-like protein - Biomphalaria glabrata
(Bloodfluke planorb)
Length = 1222
Score = 60.1 bits (139), Expect = 6e-08
Identities = 27/66 (40%), Positives = 44/66 (66%)
Frame = -1
Query: 705 ICLVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILD 526
I S+Y+P + ++++L+ LPRP++ILGDFN+H+T WGS+ +++ G L DI
Sbjct: 97 ITCCSLYLPPGAPLNRTDMEDLLKQLPRPYLILGDFNAHNTMWGSNNTDTRGRMLEDIFL 156
Query: 525 MYSLCI 508
+ LCI
Sbjct: 157 QHDLCI 162
>UniRef50_UPI0000E4A090 Cluster: PREDICTED: similar to reverse
transcriptase-like; n=4; Deuterostomia|Rep: PREDICTED:
similar to reverse transcriptase-like -
Strongylocentrotus purpuratus
Length = 565
Score = 52.0 bits (119), Expect = 2e-05
Identities = 20/54 (37%), Positives = 35/54 (64%)
Frame = +1
Query: 4 KKIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIM 165
K++DAFEMW +RR+L++ W +TN +L ++ + ER +++FGHI+
Sbjct: 181 KRVDAFEMWCYRRLLQVSWKDKKTNVWVLEKIGTDLTIRRGIMERKLNYFGHIL 234
>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase, partial; n=7;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 787
Score = 51.6 bits (118), Expect = 2e-05
Identities = 29/100 (29%), Positives = 48/100 (48%)
Frame = +1
Query: 7 KIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHEL 186
K++ FEM R +L + NE I ++L+I + +R + +FGH++R H L
Sbjct: 402 KLEVFEMRCLRTILGVHLMDKIRNEEIRQRLNIPSTICEEITKRCLKWFGHVLRMPHHRL 461
Query: 187 EKLIITGRIEGKRAVGRTPARWSI*QEKHSVVVCTMQSMQ 306
G+R GR P RW Q ++ V + T ++ Q
Sbjct: 462 PYQAFQNDFNGRRPRGRPPKRWKD-QVQYDVGLSTQEAEQ 500
>UniRef50_Q868Q6 Cluster: Reverse transcriptase; n=3; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1248
Score = 48.4 bits (110), Expect = 2e-04
Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
Frame = -1
Query: 729 VIAAIVDGICLVSIYV-PHPSLQIFNEIKNLISVLPR--PFMIL-GDFNSHHTSWGSSVS 562
++ A V+GI +V YV P+ ++ F EI I +L R P ++L GDFN+ HT+WGS +
Sbjct: 75 IVVADVNGITIVYYYVKPNVGVRQFEEIMERIDILIRGHPRVLLAGDFNAWHTAWGSERT 134
Query: 561 NSYGYELLDILD 526
G LL +++
Sbjct: 135 KPKGIALLQLVN 146
>UniRef50_Q868R0 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1173
Score = 46.8 bits (106), Expect = 6e-04
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Frame = -1
Query: 729 VIAAIVDGICLVSIYV-PHPSLQIFNEIKNL--ISVLPRPFMILG-DFNSHHTSWGSSVS 562
++AA + GI +S Y P ++ F E N I V P ++LG DFN+ H +WGS+ +
Sbjct: 75 LVAADIGGITFISCYASPRMTVAEFEEFLNAVEIEVSAHPNVVLGGDFNAWHEAWGSART 134
Query: 561 NSYGYELLDILDMYSLCI*TR 499
G ELL+ ++ L + R
Sbjct: 135 KRKGEELLNTVEQLGLIVLNR 155
>UniRef50_UPI0000E48520 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 958
Score = 46.0 bits (104), Expect = 0.001
Identities = 23/83 (27%), Positives = 40/83 (48%)
Frame = +1
Query: 7 KIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHEL 186
++ FEM RR++ + N I QL++ + + + + +FGHI R +
Sbjct: 815 RLHTFEMACLRRIMGVTRFDRLRNTHIRTQLNMEETIIDRVATKRLRYFGHINRMNSKRY 874
Query: 187 EKLIITGRIEGKRAVGRTPARWS 255
+++ G I GKR GR RW+
Sbjct: 875 PHILLNGNIHGKRPRGRPAKRWT 897
>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 1030
Score = 45.6 bits (103), Expect = 0.001
Identities = 21/82 (25%), Positives = 39/82 (47%)
Frame = +1
Query: 7 KIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHEL 186
++ FEM RR++ + N I L++ + + + + +FGH++R
Sbjct: 902 RLQVFEMACLRRIMGVTRLDKIRNTHIKESLNLDQDVMDKVSTKRIKYFGHVLRMKPTRY 961
Query: 187 EKLIITGRIEGKRAVGRTPARW 252
K+ + G++ G R GR P RW
Sbjct: 962 PKIAVEGKVTGNRPRGRPPKRW 983
>UniRef50_UPI00015557D7 Cluster: PREDICTED: similar to reverse
transcriptase-like; n=1; Ornithorhynchus anatinus|Rep:
PREDICTED: similar to reverse transcriptase-like -
Ornithorhynchus anatinus
Length = 176
Score = 45.2 bits (102), Expect = 0.002
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +1
Query: 4 KKIDAFEMWVWRRMLRIPWTAMRTNESILRQL 99
+ +D+FE W WRR+LRIP A RTN+ IL+Q+
Sbjct: 136 RNVDSFETWGWRRLLRIPRAAHRTNKWILQQM 167
>UniRef50_Q1ZBI5 Cluster: Putative uncharacterized protein; n=1;
Psychromonas sp. CNPT3|Rep: Putative uncharacterized
protein - Psychromonas sp. CNPT3
Length = 161
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Frame = -1
Query: 705 ICLVSIYVP------HPSLQIFNE-IKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGY 547
+ + S+Y+P ++ F E + NL VLP P +ILGDFNSH WG +
Sbjct: 87 VTIASVYIPPIANNEKEKIEKFKEDLGNLAVVLPGPLLILGDFNSHGVEWGGVKDDIRAP 146
Query: 546 ELLDILDMYSLCI 508
+ D D Y I
Sbjct: 147 IIRDFCDWYKFSI 159
>UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1201
Score = 44.4 bits (100), Expect = 0.003
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Frame = -1
Query: 729 VIAAIVDGICLVSIYVPHPSLQIFNEIKNLISVLPRP------FMILGDFNSHHTSWGSS 568
++AA V GI +S+Y P PSL +E + L+ + ++ GDFN+ H WGS
Sbjct: 140 LVAAQVAGITFISVYAP-PSLSA-HEFERLLGAIELEAASHSRVVVAGDFNAWHEEWGSG 197
Query: 567 VSNSYGYELLDILDMYSLCI 508
+ G ELL ++ L I
Sbjct: 198 RNGQRGIELLQTVETLGLSI 217
>UniRef50_UPI0000E4A747 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 555
Score = 42.7 bits (96), Expect = 0.010
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 IKKIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRH 180
+KK+ AF M R ++RI W TN+ +L + ++ + R+ + + GH++R
Sbjct: 439 VKKLHAFMMRHLRAIMRISWKDKVTNKEVLERANLPSMEDLLIRKN-LRWTGHVIRMPSE 497
Query: 181 ELEKLIITGRI-EGKRAVGRTPARW 252
L K ++ ++ G+R +GR R+
Sbjct: 498 RLPKQVLFSQLPAGERGIGRPRLRY 522
>UniRef50_UPI0000E495D7 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=5;
Deuterostomia|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 604
Score = 42.7 bits (96), Expect = 0.010
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 IKKIDAFEMWVWRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRH 180
+KK+ AF M R ++RI W TN+ +L + ++ + R+ + + GH++R
Sbjct: 488 VKKLHAFMMRHLRAIMRISWKDKVTNKEVLERANLPSMEDLLIRKN-LRWTGHVIRMPSE 546
Query: 181 ELEKLIITGRI-EGKRAVGRTPARW 252
L K ++ ++ G+R +GR R+
Sbjct: 547 RLPKQVLFSQLPAGERGIGRPRLRY 571
>UniRef50_Q9U4W1 Cluster: Pol-like protein; n=1; Aedes aegypti|Rep:
Pol-like protein - Aedes aegypti (Yellowfever mosquito)
Length = 1208
Score = 42.3 bits (95), Expect = 0.013
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -1
Query: 684 VPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLCI 508
+P L++FN +++L S P +++ D N HH WGS N G ++D+ + L I
Sbjct: 115 IPDLKLRLFNALQSLSS----PILVMWDVNGHHPEWGSVSPNDRGSLIMDVAEKLDLVI 169
>UniRef50_UPI00015B42A6 Cluster: PREDICTED: similar to polyprotein;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
polyprotein - Nasonia vitripennis
Length = 1249
Score = 41.1 bits (92), Expect = 0.029
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = -1
Query: 705 ICLVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILD 526
I +++ Y P + F+ + +L + P ++ GD N+ HTSWG +N G LL +
Sbjct: 444 IRVIAFYAPPNPKEKFSSLHSLFNT-NIPTILAGDLNAKHTSWGCIHNNPAGQSLLKKIM 502
Query: 525 MYSLCI 508
+++CI
Sbjct: 503 KHNICI 508
>UniRef50_UPI0000D57951 Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=2; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 971
Score = 41.1 bits (92), Expect = 0.029
Identities = 19/53 (35%), Positives = 32/53 (60%)
Frame = -1
Query: 687 YVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDIL 529
Y P + NE+ + LP+ +ILGDFN+ HT +G +++N G+ L+D +
Sbjct: 111 YYNSPRQCLSNELMQYAASLPKA-IILGDFNARHTDFGDTLTNRNGHILIDAI 162
>UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|Rep:
Reverse transcriptase - Anopheles gambiae (African
malaria mosquito)
Length = 1049
Score = 39.9 bits (89), Expect = 0.068
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Frame = -1
Query: 720 AIVDGICLVSIYVPHPS--LQIFNE-IKNLISVLP--RPFMILGDFNSHHTSWGSSVSNS 556
A V+G+ S Y P PS L+ F+ + NL++ L RP +I GDFN+ WGS +NS
Sbjct: 75 AEVNGVFFCSCYAP-PSWELERFHVMLDNLVAELDGHRPLVIAGDFNAWAVEWGSKRTNS 133
Query: 555 YGYELLD 535
G +L+
Sbjct: 134 RGDAVLE 140
>UniRef50_Q8MY33 Cluster: Reverse transcriptase; n=9;
Obtectomera|Rep: Reverse transcriptase - Papilio xuthus
Length = 1053
Score = 39.1 bits (87), Expect = 0.12
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = -1
Query: 726 IAAIVDGICLVSIY-VPHPSLQIFNEIKNLISVL-----PRPFMILGDFNSHHTSWGSSV 565
+ A + G +V +Y P +L F ++ + L P +++GDFN+ ++WGS+
Sbjct: 77 VGATIGGTLVVGVYCAPSMNLVEFEDLLERVGTLVGRNLPHSVLVMGDFNAKSSAWGSTS 136
Query: 564 SNSYGYELLDILDMYSLCI*TR 499
+N+ G L + LC+ R
Sbjct: 137 TNARGAVLEEWALTSGLCLLNR 158
>UniRef50_UPI0000D57919 Cluster: PREDICTED: hypothetical protein,
partial; n=2; Tribolium castaneum|Rep: PREDICTED:
hypothetical protein, partial - Tribolium castaneum
Length = 263
Score = 38.7 bits (86), Expect = 0.16
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -1
Query: 624 RPFMILGDFNSHHTSWGSSVSNSYGYELLDILDMYSLC 511
R +ILGDFN+ HT +G ++SN+ G L L+ LC
Sbjct: 126 RHAVILGDFNARHTDFGDTISNTNGRHLTRSLNTLPLC 163
>UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase from
transposon X-element; n=1; Drosophila melanogaster|Rep:
Probable RNA-directed DNA polymerase from transposon
X-element - Drosophila melanogaster (Fruit fly)
Length = 908
Score = 38.7 bits (86), Expect = 0.16
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = -1
Query: 729 VIAAIVDGICLVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYG 550
VI + I ++Y P +E K+++ F++ GD+N+ H WG+ SN G
Sbjct: 95 VIETALGPISFGAVYCPPRFAWTTDEFKDILEEFQTKFIVAGDWNASHWLWGAGRSNQRG 154
Query: 549 YELLDIL 529
L +++
Sbjct: 155 IALANLV 161
>UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1;
Drosophila melanogaster|Rep: Endonuclease/reverse
transcriptase - Drosophila melanogaster (Fruit fly)
Length = 989
Score = 38.3 bits (85), Expect = 0.21
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Frame = -1
Query: 720 AIVDGICLVSIYVP-HPSLQIFNE-IKNLISVLP--RPFMILGDFNSHHTSWGSSVSNSY 553
A + GI S Y P S + F + ++ L++ RP +I GD N+ T WGS +SN+
Sbjct: 82 AKIRGIHFYSCYAPPSDSPEQFEDMLEKLVNHASGRRPTVIGGDLNAWATEWGSRISNTR 141
Query: 552 GYELLDILDMYSLCI 508
G ++D +++ L +
Sbjct: 142 GRAVIDAMNLLDLVL 156
>UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 973
Score = 37.9 bits (84), Expect = 0.27
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = -1
Query: 726 IAAIVDGICLVSIYVPHP-SLQIFNEIKNLIS---VLPRPFMILGDFNSHHTSWGSSVSN 559
+ A+++ I S Y P L+ F E+ IS P +I GDFN+ T WGS +N
Sbjct: 75 VIAVINKITFCSCYAPPRWDLEKFEEMLKRISDEVYDVNPIIISGDFNAWATEWGSKSTN 134
Query: 558 SYGYELLDILDMYSLCI 508
+ G +L+ +L +
Sbjct: 135 ARGNAVLEHFSRLNLVL 151
>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
polymerase from mobile element jockey - Drosophila
melanogaster (Fruit fly)
Length = 916
Score = 37.5 bits (83), Expect = 0.36
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = -1
Query: 714 VDGICLVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLD 535
V + + ++Y+P I ++ K++ + L F+ GD+N+ H WG+ S G L +
Sbjct: 101 VGTVTVAAVYLPPAERWIVDDFKSMFAALGNKFIAGGDYNAKHAWWGNPRSCPRGKMLQE 160
Query: 534 IL 529
++
Sbjct: 161 VI 162
>UniRef50_UPI00015B4771 Cluster: PREDICTED: similar to secreted
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to secreted protein - Nasonia vitripennis
Length = 1163
Score = 37.1 bits (82), Expect = 0.48
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 621 PFMILGDFNSHHTSWGSSVSNSYGYELLDILD 526
P +I GDFN+ H WGS + N G L L+
Sbjct: 304 PLLISGDFNAQHNMWGSEIENGLGRTLRSALE 335
>UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster
subgroup|Rep: Putative ORF2 - Drosophila melanogaster
(Fruit fly)
Length = 1219
Score = 36.7 bits (81), Expect = 0.63
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 699 LVSIYVPHPSLQIFNE-IKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYG 550
+ S Y+ P+ I N+ + N ++ P +I GDFN H WGS +N G
Sbjct: 99 IFSTYIS-PTKNITNQTLHNTFNIQQTPSLITGDFNGWHHPWGSPTTNKRG 148
>UniRef50_A6R0B1 Cluster: Predicted protein; n=9; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 1672
Score = 36.3 bits (80), Expect = 0.83
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Frame = -1
Query: 705 ICLVSIYVP------HPSLQIFNEIKNLISVLPRPFMIL-GDFNSHHTSWG 574
I + S Y+P +P Q NEI I + P +I+ GDFN HH WG
Sbjct: 499 ILIFSTYIPPFDPADNPIHQTLNEISRTIRLSPATTLIIAGDFNRHHQMWG 549
>UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 1119
Score = 35.9 bits (79), Expect = 1.1
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -1
Query: 618 FMILGDFNSHHTSWGSSVSNSYGYELLDILD 526
F++ GDFN+HH+ WGSS G +++ LD
Sbjct: 122 FILAGDFNAHHSVWGSSKECCNGKVIVENLD 152
>UniRef50_UPI0000F329BA Cluster: LOC534369 protein; n=1; Bos
taurus|Rep: LOC534369 protein - Bos Taurus
Length = 87
Score = 35.9 bits (79), Expect = 1.1
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 142 MSFFGHIMRSSRHELEKLIITGRIEGKRAVGRTPARW 252
+ +FGH+MR LEK ++ G I GKR GR RW
Sbjct: 7 LQYFGHLMRRV-DSLEKTLMLGGIGGKRRSGRQRMRW 42
>UniRef50_O18558 Cluster: Lian-Aa1 retrotransposon protein; n=1;
Aedes aegypti|Rep: Lian-Aa1 retrotransposon protein -
Aedes aegypti (Yellowfever mosquito)
Length = 1189
Score = 35.9 bits (79), Expect = 1.1
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 693 SIYVPHPSLQIFNEIKNLIS---VLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDM 523
S+Y+PH ++ K ++ P ++ D N+HH WGSS N G L++ L
Sbjct: 89 SVYLPHDEPSPTDDFKRVVVHCVTKGLPLIVGSDANAHHIIWGSSDINLRGSSLMEYLSS 148
Query: 522 YSL 514
L
Sbjct: 149 TDL 151
>UniRef50_UPI00015B43F6 Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 963
Score = 35.1 bits (77), Expect = 1.9
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 705 ICLVSIYVPHPSLQIFNEIKNLISVLPR--PFMILGDFNSHHTSWGSSVSNSYGYELLDI 532
I ++++Y H IKNLI + +I GDFN+HH+ W + G +
Sbjct: 104 ITVINLYRDHRIRTEIKSIKNLIKYITEFNKVIICGDFNAHHSMWSVGKEDHIGKHIASE 163
Query: 531 LDMYSLCI 508
+ +L I
Sbjct: 164 ITHTNLVI 171
>UniRef50_Q9Y026 Cluster: NL1Tc; n=2; Trypanosoma cruzi|Rep: NL1Tc -
Trypanosoma cruzi
Length = 327
Score = 35.1 bits (77), Expect = 1.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -1
Query: 705 ICLVSIYVPHPSLQIFNEIKNLISVLPR--PFMILGDFNSHHTSWGSSVSNSYGYELLDI 532
+ + S Y+ P Q+ + L++ LP P ++ GDFN HH W + S +
Sbjct: 152 LIVASAYM-RPPPQVTQSFRRLVNCLPASSPLLLCGDFNMHHPQWEPFLETSPSEVAAEF 210
Query: 531 LDM 523
L++
Sbjct: 211 LEL 213
>UniRef50_Q9GP60 Cluster: Pol protein; n=1; Drosophila
melanogaster|Rep: Pol protein - Drosophila melanogaster
(Fruit fly)
Length = 1227
Score = 35.1 bits (77), Expect = 1.9
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = -1
Query: 705 ICLVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILD 526
I +V+ Y+P + ++I ++ L ++LGD NS WGS +N+ G ++ ++
Sbjct: 101 INIVNAYIPPSQIFSSSDISEILQNLNGSTILLGDLNSWSPLWGSPRTNTRGKKIETVIL 160
Query: 525 MYSLCI 508
SL +
Sbjct: 161 ENSLIV 166
Score = 33.9 bits (74), Expect = 4.4
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -3
Query: 508 LNSGSPTRLTKPGEVISAIDLSICTPQLAXSLSWS 404
LN GSPT L+ + ID+S+ +PQ+A SWS
Sbjct: 167 LNDGSPTHLSTHN-TFTHIDISLISPQIAHMCSWS 200
>UniRef50_UPI0000E4771B Cluster: PREDICTED: similar to
ependymin-related protein precursor; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
ependymin-related protein precursor - Strongylocentrotus
purpuratus
Length = 605
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 615 MILGDFNSHHTSWGSSVSNSYGYELLD 535
M++GDFNSH T+WG N G EL+D
Sbjct: 168 MVIGDFNSHSTTWGYREMNEDG-ELVD 193
>UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:
ORF1 - Drosophila melanogaster (Fruit fly)
Length = 884
Score = 34.7 bits (76), Expect = 2.5
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -1
Query: 639 ISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILDM 523
IS + F+I GDFNS H +W + +N +G L ++ D+
Sbjct: 149 ISQINGNFLICGDFNSRHRAWKCTRANGWGKILNELSDL 187
>UniRef50_UPI0000F34067 Cluster: UPI0000F34067 related cluster; n=1;
Bos taurus|Rep: UPI0000F34067 UniRef100 entry - Bos
Taurus
Length = 129
Score = 34.3 bits (75), Expect = 3.4
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 34 WRRMLRIPWTAMRTNESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHELEKLIITGRI 213
W+ L++PWTA IL++++ L + + +FGH+MR + + LEK T
Sbjct: 28 WKCFLKVPWTA------ILKEINFEFSLEGLMLTLKLQYFGHLMRRA-NSLEK---TDET 77
Query: 214 EGK 222
EG+
Sbjct: 78 EGR 80
>UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Rep:
GH03753p - Drosophila melanogaster (Fruit fly)
Length = 888
Score = 33.9 bits (74), Expect = 4.4
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -1
Query: 699 LVSIYVPHPSLQIF-NEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDIL 529
L ++Y P P I ++ + L F+ GD+N+ HT WGS + G +L + L
Sbjct: 104 LAAVYCP-PRFPISEDQFMEFFNTLGDRFIAAGDYNAKHTHWGSRLVTPKGKQLYNAL 160
>UniRef50_Q868R6 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1022
Score = 33.9 bits (74), Expect = 4.4
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Frame = -1
Query: 729 VIAAIVDGICLVSIYVPHP-SLQIFNEI-KNLISVLP--RPFMILGDFNSHHTSWGSSV 565
++A V GI +VS Y P ++Q F E+ N++ + F++ GDFN+ +SW +++
Sbjct: 75 MLAVEVGGILIVSAYAPPSWTVQEFEELLDNIVLTVSGSSKFVVAGDFNAWSSSWANTL 133
>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
transcriptase-like protein; n=9; cellular organisms|Rep:
Endonuclease and reverse transcriptase-like protein -
Bombyx mori (Silk moth)
Length = 960
Score = 33.5 bits (73), Expect = 5.9
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = -1
Query: 705 ICLVSIYVPHPSLQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVSNSYGYELLDILD 526
I + S+Y+P + + ++I+ L+S + ++ GD N H W S + G L ++D
Sbjct: 111 IVIASVYLPPEKIVLSSDIEALLS-MGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVD 169
>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx
mori|Rep: Reverse transcriptase - Bombyx mori (Silk
moth)
Length = 1076
Score = 33.5 bits (73), Expect = 5.9
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Frame = -1
Query: 729 VIAAIVDGICLVSIYV-PHPSLQIFNEIKNLISVL-----PRPFMILGDFNSHHTSWGSS 568
++A ++ I ++ +Y P+ F + + V+ PR ++ GDFN+ +WGS
Sbjct: 79 IVAVQLENIVVIGVYFSPNRPTVEFERFLDGLEVIARHLAPRSVILAGDFNAKSVAWGSP 138
Query: 567 VSNSYGYELLDILDMYSLCI*TR 499
+++ G L + LCI R
Sbjct: 139 FTDARGRLLEEWAVAVGLCIVNR 161
>UniRef50_Q9TYX8 Cluster: Putative uncharacterized protein R11E3.3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein R11E3.3 - Caenorhabditis elegans
Length = 931
Score = 33.1 bits (72), Expect = 7.8
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Frame = -1
Query: 693 SIYVPHPS-----LQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVS-NSYGYELLDI 532
++YVP S ++ + N+ + +I GD N+HH++W S S ++ G EL ++
Sbjct: 5 NVYVPPRSSSSNHARLMTDFSNIFQTKSKS-IISGDVNAHHSAWHSEGSEDTRGRELAEL 63
Query: 531 LDMY 520
+D++
Sbjct: 64 IDLH 67
>UniRef50_Q4QQE9 Cluster: Endonuclease-reverse transcriptase; n=1;
Schistosoma mansoni|Rep: Endonuclease-reverse
transcriptase - Schistosoma mansoni (Blood fluke)
Length = 940
Score = 33.1 bits (72), Expect = 7.8
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = -1
Query: 699 LVSIYVPHPSLQIFNEIKNLISVLPRP--FMILGDFNSHHTSWGS----SVSNSYGYELL 538
L+S+ PS + + N ++ L R +ILGDFN+ WG+ S +NS+ EL+
Sbjct: 115 LLSLIYRSPSCEANEVLLNSLNTLSRSDRCLILGDFNAPMVDWGNLRTESSANSFEQELV 174
Query: 537 D 535
D
Sbjct: 175 D 175
>UniRef50_O46184 Cluster: Reverse transcriptase; n=2; Drosophila
subobscura|Rep: Reverse transcriptase - Drosophila
subobscura (Fruit fly)
Length = 554
Score = 33.1 bits (72), Expect = 7.8
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = -1
Query: 699 LVSIYVPHPSLQIFNE-IKNLISVLPRP--FMILG-DFNSHHTSWGSSVSNSYGYELLDI 532
LVS Y+ H ++ ++ ++S R +++G D N+HHT WGSS +N G L
Sbjct: 108 LVSSYMAHEESDPPSDLVRKIVSDSERSDTSLLIGCDANAHHTQWGSSDTNVRGESLFSF 167
Query: 531 L 529
+
Sbjct: 168 I 168
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,276,969
Number of Sequences: 1657284
Number of extensions: 15289614
Number of successful extensions: 38923
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 37062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38853
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 63792713725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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