Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30584
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    30   0.42 
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    27   2.9  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.1  
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...    25   9.0  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1019

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 517  PVHLNSGSPTRLTKPGEVISAIDLSICTPQLAXSLSWSTLCSTYNSSSISF 365
            P+H+N+    +L    E + + D  IC  +   +L+W+T+  T N   I+F
Sbjct: 875  PIHINTIPMEQLDNVKEWLDSCD--ICFYEGPLNLNWTTIMKTVNEDPIAF 923


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 308 GCMDCMVQTTTECFSC*IDHLAGVLP 231
           G MD  ++T T C+SC +D +  ++P
Sbjct: 126 GGMDHGMETQTRCWSCALDSVKNIVP 151


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 612 ILGDFNSHHTSWGSSVSNSYGYELLDILDMY 520
           +L  FN H  SW  + S +  Y++ ++L+ Y
Sbjct: 876 VLFQFNRHARSWIQNSSKAIPYQVKNLLESY 906


>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -3

Query: 466 VISAIDLSICTPQLAXSLSWSTLCSTYNSSSISFPHY*GSRPHAMYFQCTRSWVA 302
           V S + +S+  P    +L W   C TY       P+   +  H  Y  C  + +A
Sbjct: 165 VSSLVGISMDDPLFEGTLQWLCKCQTYEGGLSGVPY---AEAHGGYTFCALAAIA 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,356
Number of Sequences: 5004
Number of extensions: 62595
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)