Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30584
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0097 + 13372270-13372399,13372958-13373457                       29   5.4  
11_05_0050 + 18665251-18665613,18667280-18667744,18668548-186690...    28   9.4  
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496...    28   9.4  
07_03_1624 + 28204892-28205024,28205160-28205242,28205305-282053...    28   9.4  
03_05_0965 + 29256733-29257066,29257276-29258120,29258270-29258284     28   9.4  

>07_03_0097 + 13372270-13372399,13372958-13373457
          Length = 209

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 544 IIRHLRHV*PVHLNSGSPTRLTKPGEVISAIDLSICTP 431
           I  HL+H+  + L+   PT+L +PG+     ++ + TP
Sbjct: 54  IPHHLQHLHSLSLSLSLPTKLFQPGDWDKVEEIKVATP 91


>11_05_0050 +
           18665251-18665613,18667280-18667744,18668548-18669037,
           18669115-18669143
          Length = 448

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 78  VCSHGSPRYSQHPPPHPH 25
           +C +  P Y  HP P+PH
Sbjct: 134 ICPNPQPAYMSHPKPNPH 151


>08_01_0005 +
           47929-48201,48663-48788,49009-49054,49188-49270,
           49651-49728,49831-49884,50004-50138,50222-51691
          Length = 754

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 84  GLVCSHGSPRYSQHPPPHPHFKG 16
           G   + G P   QHP PH HF G
Sbjct: 641 GRAYATGPPHPHQHPHPHAHFGG 663


>07_03_1624 + 28204892-28205024,28205160-28205242,28205305-28205376,
            28205889-28205946,28206554-28206603,28207805-28207873,
            28208183-28208317,28208410-28208581,28208663-28208754,
            28208837-28209244,28209783-28210704,28211592-28211831,
            28211898-28212229,28212460-28212608,28213265-28213841,
            28214078-28214224,28214693-28214968,28215296-28215403,
            28215634-28215839,28216079-28216217,28216329-28216982,
            28218040-28218099,28218234-28218388,28218414-28218636,
            28218729-28218773
          Length = 1834

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 76   NESILRQLDIRKRLXSICRERVMSFFGHIMRSSRHELEKLII 201
            N  IL QLD+  R   + R   + FF  + R S+  +E +++
Sbjct: 1155 NLEILNQLDLVNRTSELARVFGIDFFSVLSRGSQFRVESMLL 1196


>03_05_0965 + 29256733-29257066,29257276-29258120,29258270-29258284
          Length = 397

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 210 NRRQARRGQNTSQMVDLAREALGGSLYHAVHATHDRVHWKYIA 338
           N  Q    Q +S  VDL +  L  S +  +  T+D V ++YIA
Sbjct: 151 NAHQTFSFQGSSYWVDLGQGILSCSCHDLISNTNDDVQFRYIA 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,392,611
Number of Sequences: 37544
Number of extensions: 451237
Number of successful extensions: 1198
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)