Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30584
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    33   0.22 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    32   0.39 
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    31   0.68 
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    31   0.68 
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    31   0.68 

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
 Frame = -1

Query: 693 SIYVPHPS-----LQIFNEIKNLISVLPRPFMILGDFNSHHTSWGSSVS-NSYGYELLDI 532
           ++YVP  S      ++  +  N+     +  +I GD N+HH++W S  S ++ G EL ++
Sbjct: 5   NVYVPPRSSSSNHARLMTDFSNIFQTKSKS-IISGDVNAHHSAWHSEGSEDTRGRELAEL 63

Query: 531 LDMY 520
           +D++
Sbjct: 64  IDLH 67



 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 463 ISAIDLSICTPQLAXSLSWSTL 398
           IS+ D++ICT  LA    WSTL
Sbjct: 86  ISSPDITICTADLATKCHWSTL 107


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +1

Query: 37  RRMLRIPWTAMRTNE---SILRQLDIRKRLXSICRERVMSFFGHIMRSSRHELEKLIITG 207
           RR++ I  T  R  +     +R++ + +   +  ++R + + GH+ R        L+   
Sbjct: 300 RRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEW 359

Query: 208 RIEG-KRAVGRTPARWS 255
           R  G KR VGR P RW+
Sbjct: 360 RPYGWKRPVGRPPMRWT 376


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical protein
            F20B4.7 protein.
          Length = 891

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +1

Query: 37   RRMLRIPWTAMRTNE---SILRQLDIRKRLXSICRERVMSFFGHIMRSSRHELEKLIITG 207
            RR++ I  T  R  +     +R + + +   +  ++R + + GH+ R        L+   
Sbjct: 774  RRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEW 833

Query: 208  RIEG-KRAVGRTPARWS 255
            R  G KR VGR P RW+
Sbjct: 834  RPYGWKRPVGRPPMRWT 850


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +1

Query: 37   RRMLRIPWTAMRTNE---SILRQLDIRKRLXSICRERVMSFFGHIMRSSRHELEKLIITG 207
            RR++ I  T  R  +     +R + + +   +  ++R + + GH+ R        L+   
Sbjct: 949  RRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEW 1008

Query: 208  RIEG-KRAVGRTPARWS 255
            R  G KR VGR P RW+
Sbjct: 1009 RPYGWKRPVGRPPMRWT 1025


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +1

Query: 37  RRMLRIPWTAMRTNE---SILRQLDIRKRLXSICRERVMSFFGHIMRSSRHELEKLIITG 207
           RR++ I  T  R  +     +R + + +   +  ++R + + GH+ R        L+   
Sbjct: 688 RRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRKDGRWTTLMTEW 747

Query: 208 RIEG-KRAVGRTPARWS 255
           R  G KR VGR P RW+
Sbjct: 748 RPYGWKRPVGRPPMRWT 764


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,663,290
Number of Sequences: 27780
Number of extensions: 369920
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)