Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30584
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   1.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   5.4  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   5.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.5  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 239 VLPTARLPSIRPVIMSFSNSCLEDRMMCPKKLIT 138
           VL     P +    ++FS SCL + ++CP   +T
Sbjct: 416 VLTIEEKPFVYVREIAFSESCLPEEILCPHFNVT 449


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 312 HGLHGLHG 289
           HGLHGLHG
Sbjct: 135 HGLHGLHG 142



 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = -1

Query: 312 HGLHGLHG 289
           HGLHGLHG
Sbjct: 138 HGLHGLHG 145


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 306 LHGLHGTNYHRVLLLLDRPS 247
           LH + GT+Y +++  L  PS
Sbjct: 286 LHNIEGTHYVKIVYYLGIPS 305


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 306 LHGLHGTNYHRVLLLLDRPS 247
           LH + GT+Y +++  L  PS
Sbjct: 301 LHNIEGTHYVKIVYYLGIPS 320


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 249 SGWCSAHGALAFYSTRNYELL*FMSGRPHDVSEEAHN 139
           +GW    G   FY  + Y+    ++ R  DV EE  N
Sbjct: 178 TGWTFHEGRKQFYFHQFYKQQPDLNYRNSDVREEMKN 214


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = -1

Query: 84  GLVCS-HGSPRYSQHPPPHPHFKGID 10
           G  C  HGSP  +  PP  P  + +D
Sbjct: 439 GSACRIHGSPATTAAPPQLPTEESVD 464


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 372 YRSLTTEDRDHMRCTSNAPDHGLHGLHG 289
           Y+ +T   + H++       H LHG+ G
Sbjct: 312 YKYITPLIQKHLKIHDTCGVHNLHGMPG 339


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 471 PGFVRRVGEPEFKC 512
           PG VRR  +P F+C
Sbjct: 410 PGRVRRRYQPAFRC 423


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,927
Number of Sequences: 438
Number of extensions: 4888
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)