Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30583
         (765 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1204 + 34936696-34936698,34936809-34936944,34937794-349378...    84   1e-16
02_01_0089 + 633642-633644,633728-633863,635356-635457,635565-63...    84   1e-16
08_01_0195 + 1612938-1613003,1613026-1613161,1614624-1614725,161...    83   2e-16
03_04_0004 + 16234648-16234731,16235178-16235237,16235598-162356...    28   9.4  

>02_05_1204 +
           34936696-34936698,34936809-34936944,34937794-34937895,
           34938153-34938199
          Length = 95

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 34/45 (75%), Positives = 39/45 (86%)
 Frame = +3

Query: 9   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLR 143
           M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIR 45


>02_01_0089 +
           633642-633644,633728-633863,635356-635457,635565-635608
          Length = 94

 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 34/45 (75%), Positives = 39/45 (86%)
 Frame = +3

Query: 9   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLR 143
           M KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R
Sbjct: 1   MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIR 45


>08_01_0195 +
           1612938-1613003,1613026-1613161,1614624-1614725,
           1614833-1614876
          Length = 115

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 33/43 (76%), Positives = 38/43 (88%)
 Frame = +3

Query: 15  KGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLR 143
           KGT SFGKRRNKTHTLC RCGR S+H+QKS C+ CGYPAA++R
Sbjct: 24  KGTGSFGKRRNKTHTLCVRCGRRSFHLQKSTCSSCGYPAARIR 66


>03_04_0004 +
           16234648-16234731,16235178-16235237,16235598-16235627,
           16235859-16235909,16235978-16236076,16236410-16236469,
           16236534-16236623,16237011-16237112,16237195-16237305,
           16237952-16238068,16238153-16238233,16239089-16239169,
           16239798-16239875,16239949-16240088,16240205-16240304,
           16240836-16240954,16241152-16241287,16241371-16241501,
           16242222-16242298,16242451-16242562,16242638-16242693,
           16243724-16243839,16245538-16245622,16245703-16245806,
           16246469-16246597,16246888-16246938
          Length = 799

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
 Frame = +3

Query: 60  LCRRCGRSSYHIQKSK---CAQC--GYPAAKLR---SCKYLF 161
           +CR+CG   Y+  K K   C+ C  G   AK+R   +CK LF
Sbjct: 741 VCRKCGLLGYYNHKLKASYCSMCKNGENMAKMRMPYACKLLF 782


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,568,424
Number of Sequences: 37544
Number of extensions: 294170
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)