Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30583
         (765 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)                  28   7.2  
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 28   9.5  
SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)                28   9.5  

>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
          Length = 831

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 309 MWFYTYKIVTVFHTSVILPGKLTLVHYTNLIRVHIAVACLLKWSNLLY 452
           MWFYT  I+     +V +   L L ++ N+I + +     L  + L++
Sbjct: 223 MWFYTESILITILLAVSVVSALILAYFVNMIILRLNFFPFLNITTLIF 270


>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 819

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 93  CDMTIYHIFCITYGSYFGA 37
           CD +IYHI+ + Y  ++GA
Sbjct: 355 CDSSIYHIYRLKYAVHYGA 373


>SB_12953| Best HMM Match : Defensin_2 (HMM E-Value=3.6)
          Length = 433

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 324 YKIVTVFHTSVILPGKLTLVHYTNLIRVHIAVACLLK 434
           Y  V + +T VI+P    ++HYT++I  +  +  L++
Sbjct: 31  YTHVNILYTHVIIPYTRVIIHYTHVIISYTHMIILIR 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,546,912
Number of Sequences: 59808
Number of extensions: 393210
Number of successful extensions: 915
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)