Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30583
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) simi...    83   1e-16
At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) simi...    81   1e-15
At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almo...    81   1e-15
At2g05330.1 68415.m00561 speckle-type POZ protein-related contai...    29   4.5  

>At1g52300.1 68414.m05901 60S ribosomal protein L37 (RPL37B) similar
           to SP:Q43292 from [Arabidopsis thaliana]
          Length = 95

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 34/46 (73%), Positives = 40/46 (86%)
 Frame = +3

Query: 9   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRS 146
           MTKGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+
Sbjct: 1   MTKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRT 46


>At3g16080.1 68416.m02032 60S ribosomal protein L37 (RPL37C) similar
           to ribosomal protein L37 GB:BAA04888 from [Homo sapiens]
          Length = 95

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 33/46 (71%), Positives = 39/46 (84%)
 Frame = +3

Query: 9   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRS 146
           M KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+
Sbjct: 1   MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRT 46


>At1g15250.1 68414.m01825 60S ribosomal protein L37 (RPL37A) almost
           identical to GB:Q43292
          Length = 95

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 33/46 (71%), Positives = 39/46 (84%)
 Frame = +3

Query: 9   MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRS 146
           M KGT SFGKRRNK+HTLC RCGR S+HIQKS+C+ C YPAA+ R+
Sbjct: 1   MGKGTGSFGKRRNKSHTLCVRCGRRSFHIQKSRCSACAYPAARKRT 46


>At2g05330.1 68415.m00561 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain
          Length = 215

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 57  TLCRRCGRSSYHIQK-SKCAQCGY 125
           T C RCG  +YH Q  + C  CG+
Sbjct: 186 TSCSRCGLITYHNQTGTSCCSCGF 209


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,173,304
Number of Sequences: 28952
Number of extensions: 263854
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)