Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30582
(758 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 105 4e-23
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 41 8e-04
At4g29860.1 68417.m04250 transducin family protein / WD-40 repea... 41 0.001
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 40 0.001
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 40 0.001
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 40 0.001
At5g43930.1 68418.m05374 transducin family protein / WD-40 repea... 40 0.002
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 40 0.002
At3g15980.3 68416.m02022 coatomer protein complex, subunit beta ... 39 0.004
At3g15980.2 68416.m02021 coatomer protein complex, subunit beta ... 39 0.004
At3g15980.1 68416.m02020 coatomer protein complex, subunit beta ... 39 0.004
At2g34260.2 68415.m04192 transducin family protein / WD-40 repea... 38 0.005
At2g34260.1 68415.m04191 transducin family protein / WD-40 repea... 38 0.005
At3g18130.1 68416.m02305 guanine nucleotide-binding family prote... 38 0.007
At1g48630.1 68414.m05440 guanine nucleotide-binding family prote... 38 0.007
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 38 0.007
At1g03110.1 68414.m00288 transducin family protein / WD-40 repea... 38 0.007
At1g79990.1 68414.m09356 coatomer protein complex, subunit beta ... 38 0.010
At3g18950.1 68416.m02405 transducin family protein / WD-40 repea... 37 0.013
At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pf... 37 0.013
At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pf... 37 0.013
At1g52360.1 68414.m05909 coatomer protein complex, subunit beta ... 37 0.013
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea... 37 0.013
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea... 37 0.013
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 37 0.017
At1g18080.1 68414.m02238 WD-40 repeat family protein / auxin-dep... 37 0.017
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 36 0.022
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 36 0.022
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 36 0.022
At3g27640.1 68416.m03452 transducin family protein / WD-40 repea... 36 0.022
At2g22040.1 68415.m02617 transducin family protein / WD-40 repea... 36 0.022
At5g16750.1 68418.m01961 transducin family protein / WD-40 repea... 36 0.029
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 36 0.029
At1g73720.1 68414.m08536 transducin family protein / WD-40 repea... 36 0.029
At1g49450.1 68414.m05543 transducin family protein / WD-40 repea... 36 0.029
At5g56130.1 68418.m07002 transducin family protein / WD-40 repea... 35 0.051
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 35 0.051
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 35 0.051
At5g08560.1 68418.m01018 transducin family protein / WD-40 repea... 34 0.089
At3g05090.2 68416.m00553 transducin family protein / WD-40 repea... 34 0.089
At3g05090.1 68416.m00552 transducin family protein / WD-40 repea... 34 0.089
At4g34380.1 68417.m04884 transducin family protein / WD-40 repea... 34 0.12
At2g26490.1 68415.m03178 transducin family protein / WD-40 repea... 34 0.12
At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha... 34 0.12
At1g47610.1 68414.m05288 transducin family protein / WD-40 repea... 33 0.16
At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic regul... 33 0.21
At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochro... 33 0.21
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 33 0.21
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 33 0.21
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 33 0.21
At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic regul... 33 0.27
At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha... 33 0.27
At2g19430.1 68415.m02267 transducin family protein / WD-40 repea... 33 0.27
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 32 0.48
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 32 0.48
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 32 0.48
At2g47990.1 68415.m06006 transducin family protein / WD-40 repea... 32 0.48
At3g50390.1 68416.m05512 transducin family protein / WD-40 repea... 31 0.63
At3g18060.1 68416.m02297 transducin family protein / WD-40 repea... 31 0.63
At2g30050.1 68415.m03654 transducin family protein / WD-40 repea... 31 0.63
At2g19540.1 68415.m02283 transducin family protein / WD-40 repea... 31 0.63
At1g71840.1 68414.m08302 transducin family protein / WD-40 repea... 31 0.63
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 31 0.83
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf... 31 0.83
At5g11240.1 68418.m01313 transducin family protein / WD-40 repea... 31 0.83
At3g21540.1 68416.m02717 transducin family protein / WD-40 repea... 31 0.83
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 31 0.83
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 31 1.1
At2g46280.2 68415.m05756 eukaryotic translation initiation facto... 31 1.1
At2g46280.1 68415.m05755 eukaryotic translation initiation facto... 31 1.1
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 31 1.1
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 30 1.5
At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat fam... 30 1.5
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea... 30 1.5
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 30 1.5
At2g41500.1 68415.m05127 WD-40 repeat family protein / small nuc... 30 1.5
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 30 1.5
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 30 1.5
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 30 1.5
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 30 1.5
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 30 1.5
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 30 1.5
At1g24130.1 68414.m03044 transducin family protein / WD-40 repea... 30 1.5
At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pf... 30 1.9
At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pf... 30 1.9
At4g01860.2 68417.m00244 transducin family protein / WD-40 repea... 30 1.9
At4g01860.1 68417.m00243 transducin family protein / WD-40 repea... 30 1.9
At4g00090.1 68417.m00009 transducin family protein / WD-40 repea... 30 1.9
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 30 1.9
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea... 30 1.9
At1g21650.1 68414.m02710 preprotein translocase secA family prot... 30 1.9
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 29 2.5
At5g48800.1 68418.m06038 phototropic-responsive NPH3 family prot... 29 2.5
At5g15550.2 68418.m01821 transducin family protein / WD-40 repea... 29 2.5
At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5 ... 29 2.5
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 29 2.5
At3g01340.1 68416.m00051 protein transport protein SEC13 family ... 29 2.5
At2g46290.1 68415.m05758 eukaryotic translation initiation facto... 29 2.5
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 29 2.5
At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pf... 29 2.5
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 29 3.4
At5g50120.1 68418.m06207 transducin family protein / WD-40 repea... 29 3.4
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 29 3.4
At4g18905.1 68417.m02787 transducin family protein / WD-40 repea... 29 3.4
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea... 29 3.4
At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10... 29 3.4
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 29 3.4
At5g64730.1 68418.m08140 transducin family protein / WD-40 repea... 29 4.4
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 29 4.4
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 29 4.4
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 29 4.4
At2g17470.1 68415.m02017 expressed protein contains Pfam profile... 29 4.4
At2g01330.1 68415.m00050 transducin family protein / WD-40 repea... 29 4.4
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 29 4.4
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 28 5.9
At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pf... 28 5.9
At5g15550.1 68418.m01820 transducin family protein / WD-40 repea... 28 5.9
At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6 ... 28 5.9
At4g03020.1 68417.m00410 transducin family protein / WD-40 repea... 28 5.9
At2g46280.3 68415.m05757 eukaryotic translation initiation facto... 28 5.9
At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 ... 28 5.9
At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5 ... 28 5.9
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 28 5.9
At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4 ... 28 7.7
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 28 7.7
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 28 7.7
At4g02290.1 68417.m00310 glycosyl hydrolase family 9 protein sim... 28 7.7
At3g26480.1 68416.m03301 transducin family protein / WD-40 repea... 28 7.7
At3g20740.1 68416.m02624 fertilization-independent endosperm pro... 28 7.7
At3g13300.2 68416.m01675 transducin family protein / WD-40 repea... 28 7.7
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 28 7.7
At3g13290.1 68416.m01673 transducin family protein / WD-40 repea... 28 7.7
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 28 7.7
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 105 bits (251), Expect = 4e-23
Identities = 43/83 (51%), Positives = 61/83 (73%)
Frame = +3
Query: 261 NYDPSLHPLEAPREYVRALNAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGA 440
N+DPSL P+E EY RAL A KLE++FA+PF+G +DGHRDGVS MAK+P+ L + S +
Sbjct: 17 NFDPSLRPMEKAVEYQRALTAAKLEKIFARPFVGAMDGHRDGVSCMAKNPNYLKGIFSAS 76
Query: 441 FDGEVRIWDLTVRKCTRNFVAHE 509
DG++R+WD++ R+ F H+
Sbjct: 77 MDGDIRLWDISSRRTVCQFPGHQ 99
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDE--------EPTNTLLSMSVVSGI 664
G VR L + DG +S G D T++ W + ED EP+ T + + +
Sbjct: 100 GAVRGLTASTDGNVLVSCGTDCTVRLWNVPRPSLEDSSISSENFIEPSATYVWKNAFWAV 159
Query: 665 THHRNKPIFATCGEQCQLWENTRNEPIK 748
H +FAT G Q +W + R++P++
Sbjct: 160 DHQFEGDLFATAGAQLDIWNHNRSQPVQ 187
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/63 (38%), Positives = 33/63 (52%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVA 503
+KL V I L GH + + +P Q ++ SG+FD VRIWD+T KC + A
Sbjct: 95 LKLWDVETGSLIKTLIGHTNYAFCVNFNP-QSNMIVSGSFDETVRIWDVTTGKCLKVLPA 153
Query: 504 HED 512
H D
Sbjct: 154 HSD 156
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/49 (36%), Positives = 30/49 (61%)
Frame = +3
Query: 318 NAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIW 464
N V + + +K + L+GH + V +A HP++ ++ASG+ D VRIW
Sbjct: 265 NCVHMWELNSKKLLQKLEGHTETVMNVACHPTE-NLIASGSLDKTVRIW 312
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +2
Query: 524 LCYNPDGKHFMSVGDDKTIKTWKAE 598
+ ++ D + +S DDKT+K W E
Sbjct: 77 VAFSSDARFIVSASDDKTLKLWDVE 101
>At4g29860.1 68417.m04250 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400); WDVCF
variant 1 (gi:12006981) [Mus musculus]
Length = 386
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAH 506
+ L GHR V ++ HPS+ ++L +G+ DGE+RIWD + + AH
Sbjct: 10 VAVLRGHRHSVMDVSFHPSK-SLLFTGSADGELRIWDTIQHRAVSSAWAH 58
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVA 503
+KL V + GHR S + HP LASG+ D ++IWD+ + C + +
Sbjct: 82 IKLWDVEEAKMVRAFTGHRSNCSAVEFHPFG-EFLASGSSDANLKIWDIRKKGCIQTYKG 140
Query: 504 HEDG 515
H G
Sbjct: 141 HSRG 144
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 360 GCLD---GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHE 509
GC+ GH G+ST+ P V+ SG D V++WDLT K F HE
Sbjct: 133 GCIQTYKGHSRGISTIRFTPDGRWVV-SGGLDNVVKVWDLTAGKLLHEFKFHE 184
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301 from
[Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
V+L + + F L GHRDGV ++ S VL +G DG +R WD+ C R
Sbjct: 172 VRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFR 227
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 369 DGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNF 497
+GH+ +S+ +P + +G+FD +++WD + +F
Sbjct: 100 NGHKYAISSAIWYPIDTGLFITGSFDHYLKVWDTNTAQAVVDF 142
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
V+L + + F L GHRDGV ++ S VL +G DG +R WD+ C R
Sbjct: 172 VRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAGCFR 227
Score = 31.1 bits (67), Expect = 0.83
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 369 DGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNF 497
+GH+ +S+ +P + +G+FD V++WD + +F
Sbjct: 100 NGHKYAISSAIWYPIDTGMFITGSFDHYVKVWDTNTSQVVVDF 142
>At5g43930.1 68418.m05374 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat protein 5 (SP:Q9UGP9) [Homo
sapiens]
Length = 726
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRN 494
L GHR + HP ++ASG+ D EVR+W+ T +C R+
Sbjct: 144 LTGHRRTPWVVRFHPHHSEIVASGSLDLEVRLWNTTTSECIRS 186
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 360 GCLD---GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHE 509
GC+ GH G+ST+ P V+ SG D V++WDLT K F HE
Sbjct: 82 GCIQTYKGHTRGISTIEFSPDGRWVV-SGGLDNVVKVWDLTAGKLLHEFKCHE 133
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVA 503
+KL + + GHR S + HP LASG+ D +R+WD + C + +
Sbjct: 31 IKLWDLEESKMVRAFTGHRSNCSAVEFHPFG-EFLASGSSDTNLRVWDTRKKGCIQTYKG 89
Query: 504 HEDG 515
H G
Sbjct: 90 HTRG 93
>At3g15980.3 68416.m02022 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 348 KPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
K + LDGH VS + HP +L ++ +G+ DG VRIW T
Sbjct: 219 KSCVQTLDGHTHNVSAVCFHP-ELPIIITGSEDGTVRIWHAT 259
>At3g15980.2 68416.m02021 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 918
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 348 KPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
K + LDGH VS + HP +L ++ +G+ DG VRIW T
Sbjct: 219 KSCVQTLDGHTHNVSAVCFHP-ELPIIITGSEDGTVRIWHAT 259
>At3g15980.1 68416.m02020 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); identical to coatomer protein
complex, beta prime (beta'-COP) protein {Arabidopsis
thaliana} (GI:9294445); similar to Coatomer beta'
subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:P35606) [Homo sapiens]
Length = 909
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 348 KPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
K + LDGH VS + HP +L ++ +G+ DG VRIW T
Sbjct: 219 KSCVQTLDGHTHNVSAVCFHP-ELPIIITGSEDGTVRIWHAT 259
>At2g34260.2 68415.m04192 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 296
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 369 DGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
+ H D V+T+ +ASG G V+IWD R C+ F AHED
Sbjct: 34 NAHEDAVNTLINVTE--TTIASGDDKGCVKIWDTRQRSCSHEFNAHED 79
>At2g34260.1 68415.m04191 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 353
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 369 DGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
+ H D V+T+ +ASG G V+IWD R C+ F AHED
Sbjct: 91 NAHEDAVNTLINVTE--TTIASGDDKGCVKIWDTRQRSCSHEFNAHED 136
>At3g18130.1 68416.m02305 guanine nucleotide-binding family protein
/ activated protein kinase C receptor (RACK1) identical
to guanine nucleotide-binding protein; activated protein
kinase C receptor; RACK1 (GI:9294068) {Arabidopsis
thaliana}; contains Pfam profile: PF00400 WD domain,
G-beta repeat (7 copies)
Length = 326
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 432 SGAFDGEVRIWDLTVRKCTRNFVAH 506
SG++DGE+R+WDL + TR FV H
Sbjct: 80 SGSWDGELRLWDLATGETTRRFVGH 104
Score = 32.3 bits (70), Expect = 0.36
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 369 DGHRDGVSTMAKHPSQLA-VLASGAFDGEVRIWDLTVRKCTRNFVAH 506
DGH++ VS + P+ L + S ++D V++W+L K + V H
Sbjct: 146 DGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWNLQNCKLRNSLVGH 192
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
L GH ++T+A P ++ ASG DG + +WDL K
Sbjct: 189 LVGHSGYLNTVAVSPDG-SLCASGGKDGVILLWDLAEGK 226
>At1g48630.1 68414.m05440 guanine nucleotide-binding family protein
/ activated protein kinase C receptor, putative / RACK,
putative contains 7 WD-40 repeats (PF00400); very
similar to guanine nucleotide-binding protein; activated
protein kinase C receptor; RACK1 (GI:9294068)
{Arabidopsis thaliana}; similar to WD-40 repeat
auxin-dependent protein ARCA (SP:O24456) [Arabidopsis
thaliana];
Length = 326
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 432 SGAFDGEVRIWDLTVRKCTRNFVAH 506
SG++DGE+R+WDL + TR FV H
Sbjct: 80 SGSWDGELRLWDLATGESTRRFVGH 104
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
L GH ++T+A P ++ ASG DG + +WDL K
Sbjct: 189 LAGHSGYLNTVAVSPDG-SLCASGGKDGVILLWDLAEGK 226
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 348 KPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL-TVRKCTRNFVAH 506
K + GH GVS + P Q +L S D +V+IWD+ KC R ++ H
Sbjct: 272 KRLVHTWSGHTKGVSAIRFFPKQGHLLLSAGMDCKVKIWDVYNSGKCMRTYMGH 325
Score = 34.7 bits (76), Expect = 0.067
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAE 598
VR +C++ DG F++ G DK IK W E
Sbjct: 329 VRDICFSNDGSKFLTAGYDKNIKYWDTE 356
>At1g03110.1 68414.m00288 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to WD-repeat domain 4 protein (GI:9955698) [Mus
musculus]
Length = 427
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEA 601
+RA+ Y+ GK F+S GDDK +K W A++
Sbjct: 66 IRAIRYSTSGKLFVSAGDDKLVKIWSADS 94
>At1g79990.1 68414.m09356 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:P35606)
[Homo sapiens]; similar to Coatomer beta' subunit
(Beta'-coat protein) (Beta'-COP) (p102) (SP:O55029) [Mus
musculus]
Length = 920
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +3
Query: 348 KPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
K + L+GH VS ++ HP +L ++ +G+ DG VRIW T
Sbjct: 219 KSCVQTLEGHTHNVSAVSFHP-ELPIIITGSEDGTVRIWHAT 259
>At3g18950.1 68416.m02405 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 473
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
H D VS ++ + +L +L SG++D +++W L+ KC + AH+D
Sbjct: 248 HYDAVSCLSLN-EELGLLYSGSWDKTLKVWRLSDSKCLESIQAHDD 292
>At1g64610.2 68414.m07324 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +2
Query: 488 KKFCCS*GWVRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVSGIT 667
++F G + A+ ++PDGK+ S G+D ++ W ++TE EE T+T V SG+
Sbjct: 212 QEFSAHDGSILAMKFSPDGKYIASAGEDCVVRVW---SITE--EERTDTYEVAEVDSGVY 266
Query: 668 HHRNK 682
N+
Sbjct: 267 FGMNQ 271
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
H + V+ +A +P SG+ DG+VRIWD+T
Sbjct: 361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVT 393
>At1g64610.1 68414.m07323 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 647
Score = 37.1 bits (82), Expect = 0.013
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +2
Query: 488 KKFCCS*GWVRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVSGIT 667
++F G + A+ ++PDGK+ S G+D ++ W ++TE EE T+T V SG+
Sbjct: 212 QEFSAHDGSILAMKFSPDGKYIASAGEDCVVRVW---SITE--EERTDTYEVAEVDSGVY 266
Query: 668 HHRNK 682
N+
Sbjct: 267 FGMNQ 271
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
H + V+ +A +P SG+ DG+VRIWD+T
Sbjct: 361 HNNFVTCVAFNPVDDNYFISGSIDGKVRIWDVT 393
>At1g52360.1 68414.m05909 coatomer protein complex, subunit beta 2
(beta prime), putative contains 7 WD-40 repeats
(PF00400) (1 weak); similar to (SP:O55029) Coatomer
beta' subunit (Beta'-coat protein) (Beta'-COP) (p102)
(SP:O55029) [Mus musculus]; similar to GI:298096 from
[Homo sapiens]
Length = 926
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 348 KPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
K + L+GH VS + HP +L ++ +G+ DG VRIW T
Sbjct: 219 KSCVQTLEGHTHNVSAVCFHP-ELPIIITGSEDGTVRIWHAT 259
>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 793
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
L GHR + HP ++ASG+ D EVR+W+ +C R
Sbjct: 141 LTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGECIR 182
>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to neural cell adhesion molecule 2, large
isoform precursor gb|M76710 from Xenopus laevis, and
beta transducin from S. cerevisiae gb|Q05946. ESTs
gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
gb|H36304, and gb|N65606 come from
Length = 790
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
L GHR + HP ++ASG+ D EVR+W+ +C R
Sbjct: 141 LTGHRRTPWVVRFHPRHSEIVASGSLDHEVRLWNAKTGECIR 182
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 36.7 bits (81), Expect = 0.017
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVA 503
V + K +G + GH V ++ P A+ A+G+ D VR+WDL +R +
Sbjct: 225 VNMHDAEGKTLLGSMSGHTSWVLSVDASPDGGAI-ATGSSDRTVRLWDLKMRAAIQTMSN 283
Query: 504 HED 512
H D
Sbjct: 284 HND 286
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
VKL R + GH GV+ +A HPS + + AS + D VR++D+
Sbjct: 42 VKLWRPDELDLVRTNTGHSLGVAALAAHPSGI-IAASSSIDSFVRVFDV 89
>At1g18080.1 68414.m02238 WD-40 repeat family protein /
auxin-dependent protein (ARCA) / guanine
nucleotide-binding protein beta subunit, putative
identical to SP|O24456 Guanine nucleotide-binding
protein beta subunit-like protein (WD-40 repeat
auxin-dependent protein ARCA) {Arabidopsis thaliana};
contains 7 WD-40 repeats (PF00400)
Length = 327
Score = 36.7 bits (81), Expect = 0.017
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 432 SGAFDGEVRIWDLTVRKCTRNFVAH 506
SG++DGE+R+WDL TR FV H
Sbjct: 80 SGSWDGELRLWDLAAGVSTRRFVGH 104
Score = 31.5 bits (68), Expect = 0.63
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
L GH VST+A P ++ ASG DG V +WDL K
Sbjct: 190 LAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGK 227
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 312 ALNAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
A +KL + + L GHR ++ HP ASG+ D ++IWD+ + C
Sbjct: 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIH 137
Query: 492 NFVAHEDG 515
+ H G
Sbjct: 138 TYKGHTRG 145
Score = 35.1 bits (77), Expect = 0.051
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVA 503
+K+ + K I GH GV+ + P V+ SG D V++WDLT K F +
Sbjct: 125 LKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVV-SGGEDNIVKVWDLTAGKLLTEFKS 183
Query: 504 HE 509
HE
Sbjct: 184 HE 185
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEA 601
V L + PDG+ +S G+D +K W A
Sbjct: 146 VNVLRFTPDGRWVVSGGEDNIVKVWDLTA 174
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 36.3 bits (80), Expect = 0.022
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 312 ALNAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
A +KL + + L GHR ++ HP ASG+ D ++IWD+ + C
Sbjct: 79 ASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFG-EFFASGSLDTNLKIWDIRKKGCIH 137
Query: 492 NFVAHEDG 515
+ H G
Sbjct: 138 TYKGHTRG 145
Score = 35.1 bits (77), Expect = 0.051
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVA 503
+K+ + K I GH GV+ + P V+ SG D V++WDLT K F +
Sbjct: 125 LKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVV-SGGEDNIVKVWDLTAGKLLTEFKS 183
Query: 504 HE 509
HE
Sbjct: 184 HE 185
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEA 601
V L + PDG+ +S G+D +K W A
Sbjct: 146 VNVLRFTPDGRWVVSGGEDNIVKVWDLTA 174
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
H D +S +A H ++ SG++D +++W L+ KC + AH+D
Sbjct: 173 HADSISCLAVHAG---IIYSGSWDKTLKVWRLSDLKCLESIKAHDD 215
>At3g27640.1 68416.m03452 transducin family protein / WD-40 repeat
family protein contains seven WD-40 G-protein beta
repeats; similar to RA-regulated nuclear
matrix-associated protein (GI:14161320) {Homo sapiens}
Length = 535
Score = 36.3 bits (80), Expect = 0.022
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 360 GCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
G L GH V +M HP+ +L SG+ DG +WDL
Sbjct: 164 GVLIGHTGTVKSMCSHPTNSDLLVSGSRDGCFALWDL 200
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCT 488
L GH V+ + PS++ +A+ + D VR+W++ CT
Sbjct: 377 LKGHDFEVTAVDWSPSEIGKVATASDDFTVRLWNIENNICT 417
>At2g22040.1 68415.m02617 transducin family protein / WD-40 repeat
family protein similar to Pop3 (GI:3434986)
[Schizosaccharomyces pombe]; contains Pfam PF00400: WD
domain, G-beta repeat (6 copies, 2 weak);
Length = 312
Score = 36.3 bits (80), Expect = 0.022
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 423 VLASGAFDGEVRIWDLTVRKCTRNF 497
++ SG+ DG V+IWDL VR+C R F
Sbjct: 98 MMYSGSEDGSVKIWDLRVRECQREF 122
>At5g16750.1 68418.m01961 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats (PF00400);
similar to transducin homolog sazD - Homo sapiens,
EMBL:U02609
Length = 876
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHE 509
++G D ++ +A P + ++G ++R+WDL KC R++ HE
Sbjct: 56 IEGESDTLTALALSPDDKLLFSAG-HSRQIRVWDLETLKCIRSWKGHE 102
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 372 GHRDGVSTMAKHP-SQLAVLASGAFDGEVRIWDLTVRKCTRNFVA 503
GH+ VS++ HP S +L SG+ D VR+WDL + + +A
Sbjct: 142 GHKGVVSSILFHPDSNKNILISGSDDATVRVWDLNAKNTEKKCLA 186
Score = 34.7 bits (76), Expect = 0.067
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = +2
Query: 551 FMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVS 658
F+S D+T+K W + ++E+ EEP N L + SVV+
Sbjct: 462 FVSGSGDRTLKVWSLDGISEDSEEPIN-LKTRSVVA 496
Score = 31.1 bits (67), Expect = 0.83
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHE 509
GH V MA H S +LA+ D +V +WD+ CT F H+
Sbjct: 100 GHEGPVMGMACHASG-GLLATAGADRKVLVWDVDGGFCTHYFRGHK 144
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/68 (27%), Positives = 30/68 (44%)
Frame = +3
Query: 312 ALNAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
A +KL + + L GHR ++ HP ASG+ D ++IWD+ + C
Sbjct: 172 ASGTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFG-EFFASGSLDTNLKIWDIRKKGCIH 230
Query: 492 NFVAHEDG 515
+ H G
Sbjct: 231 TYKGHTRG 238
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVA 503
+K+ + K I GH GV+ + P ++ SG D V++WDLT K F +
Sbjct: 218 LKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIV-SGGEDNVVKVWDLTAGKLLHEFKS 276
Query: 504 HE 509
HE
Sbjct: 277 HE 278
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEA 601
V L + PDG+ +S G+D +K W A
Sbjct: 239 VNVLRFTPDGRWIVSGGEDNVVKVWDLTA 267
>At1g73720.1 68414.m08536 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to Will die slowly protein
(SP:Q9V3J8)[Drosophila melanogaster]
Length = 511
Score = 35.9 bits (79), Expect = 0.029
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 423 VLASGAFDGEVRIWDLTVRKCTRNFVAHEDG 515
+LASG+ DG+++IW + C R F AH G
Sbjct: 277 MLASGSQDGKIKIWRIRTGVCIRRFDAHSQG 307
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +2
Query: 521 ALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVSGITHHRNKPIFATC 700
A C + G +G+DK + + ++ E ++ V GITHH ++ + AT
Sbjct: 445 AACVSTKGDWIYCIGEDKKLYCFNYQSGGLEHF----MMVHEKDVIGITHHPHRNLLATY 500
Query: 701 GEQC--QLWE 724
E C +LW+
Sbjct: 501 SEDCTMKLWK 510
>At1g49450.1 68414.m05543 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein GI:2739374
from [Arabidopsis thaliana]; no characterized homologs
Length = 471
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/46 (34%), Positives = 28/46 (60%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
H D VS ++ + L +L SG++D +++W L+ KC + AH+D
Sbjct: 244 HFDAVSCLSLN-EDLGLLYSGSWDKTLKVWRLSDSKCLESIEAHDD 288
>At5g56130.1 68418.m07002 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to beta transducin-like protein HET-E2C*4
(GI:17225206) [Podospora anserina]
Length = 315
Score = 35.1 bits (77), Expect = 0.051
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
L GH D V + P ++A+ + D VR+WD KCT+
Sbjct: 62 LKGHTDSVDQLCWDPKHSDLVATASGDKSVRLWDARSGKCTQ 103
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 35.1 bits (77), Expect = 0.051
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAH 506
GHR V ++A P +ASG DG + +WDL+ +C + H
Sbjct: 539 GHRSMVLSLAMSPDG-RYMASGDEDGTIMMWDLSTARCITPLMGH 582
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 405 HPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAH 506
HP+ +A+G+ D VR+WD+ +C R F+ H
Sbjct: 508 HPN-CNYIATGSSDKTVRLWDVQTGECVRIFIGH 540
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 35.1 bits (77), Expect = 0.051
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAH 506
L GH + V + +P ++ SG+FD +RIW++ KC R AH
Sbjct: 124 LRGHTNFVFCVNFNPPS-NLIVSGSFDETIRIWEVKTGKCVRMIKAH 169
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 318 NAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASG-AFDGEVRIW 464
N V L + A+ + L+GH D V +++ HP Q + +SG D +RIW
Sbjct: 280 NCVYLWDLQARNILQRLEGHTDAVISVSCHPVQNEISSSGNHLDKTIRIW 329
>At5g08560.1 68418.m01018 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to will die slowly protein (WDS) (SP:Q9V3J8)
[Drosophila melanogaster]
Length = 589
Score = 34.3 bits (75), Expect = 0.089
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
L GH V+ ++ P+ L +LAS + DG +RIW L
Sbjct: 527 LPGHAGAVNCVSWSPTNLHMLASASDDGTIRIWGL 561
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFM-SVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVSGITHHRN 679
G V + ++P H + S DD TI+ W + + +++++ L+ S +G+ H N
Sbjct: 532 GAVNCVSWSPTNLHMLASASDDGTIRIWGLDRINQQNQK--KKLVQGSSSNGVIHRCN 587
>At3g05090.2 68416.m00553 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
L GH D V + + L SG+ D +R+WDL ++C + H D
Sbjct: 251 LRGHTDNVRVLLLDSTGRFCL-SGSSDSMIRLWDLGQQRCLHTYAVHTD 298
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
H D V+ +A V+ASG GEV IWD+
Sbjct: 125 HSDYVTCLAVAAKNNNVVASGGLGGEVFIWDI 156
>At3g05090.1 68416.m00552 transducin family protein / WD-40 repeat
family protein contains seven G-protein beta WD-40
repeats; similar to uncharacterized KIAA1449 protein
(gi:7959157) [Homo sapiens]
Length = 753
Score = 34.3 bits (75), Expect = 0.089
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
L GH D V + + L SG+ D +R+WDL ++C + H D
Sbjct: 251 LRGHTDNVRVLLLDSTGRFCL-SGSSDSMIRLWDLGQQRCLHTYAVHTD 298
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
H D V+ +A V+ASG GEV IWD+
Sbjct: 125 HSDYVTCLAVAAKNNNVVASGGLGGEVFIWDI 156
>At4g34380.1 68417.m04884 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Myosin heavy chain kinase B (MHCK
B).(SP:P90648) [Dictyostelium discoideum]
Length = 495
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
H D VS+++ +L +L S ++D +++W + KC + AH+D
Sbjct: 234 HNDAVSSLSLDV-ELGLLYSSSWDTTIKVWRIADSKCLESIHAHDD 278
>At2g26490.1 68415.m03178 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
related to En/Spm transposon family of maize
Length = 465
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
H D VS ++ + Q +L S ++D +++W + KC + AH+D
Sbjct: 205 HADAVSCLSLNDEQ-GLLYSASWDRTIKVWRIADSKCLESIPAHDD 249
>At1g62020.1 68414.m06995 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1216
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
L+GH GV+ A HP+ L ++ SGA D +V++W + K
Sbjct: 200 LEGHDRGVNWAAFHPT-LPLIVSGADDRQVKLWRMNETK 237
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL-TVRKCT 488
+ L GH V + HP + V+ S + D VR+WD+ +RK T
Sbjct: 128 VSVLTGHNHYVMCASFHPKEDLVV-SASLDQTVRVWDIGALRKKT 171
>At1g47610.1 68414.m05288 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to En/Spm-like transposon protein (GI:2739374)
[Arabidopsis thaliana]
Length = 351
Score = 33.5 bits (73), Expect = 0.16
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
Frame = +3
Query: 246 SENPRNYDP--SLHPL-EAPREYVRALNAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQ 416
S+NPR Y SL L + + V+ N V++ R +I H D VS ++ Q
Sbjct: 92 SKNPRVYTRAGSLPALKDVLKSSVKPSNYVEVRRCRTALWIK----HSDAVSCLSLAEDQ 147
Query: 417 LAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
+L S ++D V++W + KC + AH+D
Sbjct: 148 -GLLYSASWDRTVKVWRIHDLKCIESIKAHDD 178
>At4g15900.1 68417.m02416 PP1/PP2A phosphatases pleiotropic
regulator 1 (PRL1) identical to PP1/PP2A phosphatases
pleiotropic regulator PRL1 (SP:Q42384) [Arabidopsis
thaliana], PRL1 [Arabidopsis thaliana] GI:577733;
contains Pfam PF00400: WD domain, G-beta repeat (7
copies)
Length = 486
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVR 479
GH GV +A HP+ L VL +G D R+WD+ +
Sbjct: 258 GHLSGVYCLALHPT-LDVLLTGGRDSVCRVWDIRTK 292
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTW 589
GWVR++ ++P + F + D+TIK W
Sbjct: 177 GWVRSVAFDPSNEWFCTGSADRTIKIW 203
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTN 631
+ A CY+ G ++ DKTIK WK + + P N
Sbjct: 438 IYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPIN 476
>At4g11110.1 68417.m01803 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400); similar to
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]; contains non-consensus (GC) donor splice
sites at introns 4 and 6
Length = 1017
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 426 LASGAFDGEVRIWDLTVRKCTRNFVAHE 509
LAS +DG V++WD+T + +F+ HE
Sbjct: 769 LASSDYDGIVKLWDVTTGQAISHFIEHE 796
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 33.1 bits (72), Expect = 0.21
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
+ CL GH + + HP + S +DG+ IWD+
Sbjct: 632 VHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDI 669
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
IGC GH V + P+ L+ ASG+ DG +RIW T
Sbjct: 263 IGCNKGHHGPVHCVRFTPTGLSY-ASGSEDGTIRIWQTT 300
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSV 652
G V + + P G + S +D TI+ W+ E+ E ++ + SV
Sbjct: 271 GPVHCVRFTPTGLSYASGSEDGTIRIWQTTPANPEENETSSRRVKHSV 318
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
IGC GH V + P+ L+ ASG+ DG +RIW T
Sbjct: 263 IGCNKGHHGPVHCVRFTPTGLSY-ASGSEDGTIRIWQTT 300
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSV 652
G V + + P G + S +D TI+ W+ E+ E ++ + SV
Sbjct: 271 GPVHCVRFTPTGLSYASGSEDGTIRIWQTTPANPEENETSSRRVKHSV 318
>At3g16650.1 68416.m02128 PP1/PP2A phosphatases pleiotropic
regulator 2 (PRL2) identical to SP|Q39190 PP1/PP2A
phosphatases pleiotropic regulator PRL2 {Arabidopsis
thaliana}, GB:Q39190 from [Arabidopsis thaliana];
contains Pfam PF00400: WD domain, G-beta repeat (7
copies, 1 weak)
Length = 479
Score = 32.7 bits (71), Expect = 0.27
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTW 589
GWVR++ ++P + F + D+TIK W
Sbjct: 171 GWVRSVAFDPSNEWFCTGSADRTIKIW 197
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTN 631
+ A CY+ G ++ DKTIK WK + + P N
Sbjct: 431 IYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLN 469
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVR 479
GH GV +A HP+ L V+ +G D R+WD+ +
Sbjct: 252 GHLHGVYCLALHPT-LDVVLTGGRDSVCRVWDIRTK 286
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTWKAE 598
G VR L + + S GDDK +K W E
Sbjct: 213 GQVRGLAVSNRHTYMFSAGDDKQVKCWDLE 242
>At2g21390.1 68415.m02546 coatomer protein complex, subunit alpha,
putative contains Pfam PF00400: WD domain, G-beta
repeat; similar to Coatomer alpha subunit (Alpha-coat
protein) (Alpha-COP) (HEPCOP) (HEP-COP) (SP:P53621)
[Homo sapiens]
Length = 1218
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
L+GH GV+ + HP+ L ++ SGA D +V++W + K
Sbjct: 200 LEGHDRGVNWASFHPT-LPLIVSGADDRQVKLWRMNETK 237
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
I L GH V + HP + V+ S + D VR+WD+ K
Sbjct: 128 ISVLTGHNHYVMCASFHPKEDLVV-SASLDQTVRVWDIGALK 168
>At2g19430.1 68415.m02267 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 5
(SP:Q9UGP9) [Homo sapiens]; contains 7 Trp-Asp WD-40
repeats
Length = 367
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
GH D + T+ S +L +G+ DG RIWD KC +
Sbjct: 199 GHSDYLHTVVSRSSASQIL-TGSEDGTARIWDCKTGKCVK 237
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWD 467
L+GH D V +A +P+ V+AS + D VRIW+
Sbjct: 16 LEGHTDRVWNVAWNPAADGVIASCSADKTVRIWE 49
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
+G L H+ V + + +LASGA DGE+ IWDL
Sbjct: 115 VGHLSVHKGPVRGLEFNAISSNLLASGADDGEICIWDL 152
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
+G L H+ V + + +LASGA DGE+ IWDL
Sbjct: 115 VGHLSVHKGPVRGLEFNAISSNLLASGADDGEICIWDL 152
>At2g47990.1 68415.m06006 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 5 WD-40 repeats (PF00400); similar to beta
transducin-like protein HET-E2C*4
(GP:17225206)[Podospora anserina]
Length = 530
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVA 503
VK V I L GH+D V P ++L +G++D V++WD V T N++A
Sbjct: 160 VKYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWDARVH--TSNWIA 217
>At3g50390.1 68416.m05512 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to myosin heavy chain kinase B (gb:U90946)
[Dictyostelium discoideum]
Length = 469
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
H D +S +A + +L SG++D ++W ++ +C + AHED
Sbjct: 210 HLDAISCLALSEDK-RLLYSGSWDKTFKVWRVSDLRCVESVNAHED 254
>At3g18060.1 68416.m02297 transducin family protein / WD-40 repeat
family protein similar to 66 kDa stress protein
(SP:P90587) [Physarum polycephalum (Slime mold)];
similar to WDR1 protein GB:AAD05042 [Gallus gallus]
(Genomics 56 (1), 59-69 (1999)); contains 11 WD-40
repeats (PF00400)
Length = 609
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVSG 661
G + A+ ++PDGK ++V DK+ K W +++ NT L+ SG
Sbjct: 233 GSIYAVSWSPDGKQVLTVSADKSAKIWD---ISDNGSGSLNTTLNCPGSSG 280
>At2g30050.1 68415.m03654 transducin family protein / WD-40 repeat
family protein similar to SEC13-related protein
(SP:P55735) [Homo sapiens]
Length = 302
Score = 31.5 bits (68), Expect = 0.63
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMA-KHPSQLAVLASGAFDGEVRIW 464
+ L GHR V +A HP ++LAS ++DG+V +W
Sbjct: 49 LATLTGHRGPVWEVAWAHPKYGSILASCSYDGQVILW 85
>At2g19540.1 68415.m02283 transducin family protein / WD-40 repeat
family protein contains WD-40 repeats (PF00400); similar
to Glutamate-rich WD repeat protein (GRWD)
(SP:Q9BQ67)[Homo sapiens]
Length = 469
Score = 31.5 bits (68), Expect = 0.63
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKC-TRNFVAH 506
GH V + P++ V AS + DG V +WD+ + K +F AH
Sbjct: 267 GHTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGKSPALSFKAH 312
>At1g71840.1 68414.m08302 transducin family protein / WD-40 repeat
family protein contains Pfam profile:PF00560 Leucine
Rich Repeat (4 copies); Pfam profile:PF00069 Eukaryotic
protein kinase domain; Pfam profile:PF00400 WD domain,
G-beta repeat (7 copies)
Length = 407
Score = 31.5 bits (68), Expect = 0.63
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 366 LDGHRDGVSTMA-KHPSQLAVLASGAFDGEVRIWD 467
L GH+D VS +A + QL LASG DG V+I+D
Sbjct: 109 LPGHKDSVSCLAFSYDGQL--LASGGLDGVVQIFD 141
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
H +GV+++ + LA+G +G V IWD + C + H+D
Sbjct: 327 HEEGVTSLTWIGTS-KYLATGCANGTVSIWDSLLGNCVHTYHGHQD 371
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 405 HPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
+P++ LAS +FD V++WD + K +F H +
Sbjct: 507 NPNKQLTLASASFDSTVKLWDAELGKMLCSFNGHRE 542
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 369 DGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAH 506
+GHR+ V ++A P+ +ASG+ D + IW + K + + +
Sbjct: 538 NGHREPVYSLAFSPNG-EYIASGSLDKSIHIWSIKEGKIVKTYTGN 582
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
L+GH V A PS ++LASG+ D RIW +
Sbjct: 261 LEGHTSEVCACAWSPSA-SLLASGSGDATARIWSI 294
>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 709
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
H+ V+ +A +P SG+ DG+VRIWD++
Sbjct: 403 HKSFVTCVAFNPVDDNYFISGSIDGKVRIWDVS 435
>At5g11240.1 68418.m01313 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to uncharacterized protein KIAA0007 (GI:1663708)
{Homo sapiens} 1.2e-11
Length = 615
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = +2
Query: 467 FNCTEVYK--KFCCS*GWVRALCYNPDGKHFMSVG-DDKTIKTWKAEAVTEE 613
FNC+++ K KF G VR + + DGK+ +S ++ I WK + ++
Sbjct: 183 FNCSDLKKIQKFTGHPGVVRCVAFTEDGKYVLSSAVGERYIAVWKTDGAKKQ 234
>At3g21540.1 68416.m02717 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (10 copies); similar to WD-repeat protein
3 (SP:Q9UNX4) [Homo sapiens]
Length = 955
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 387 VSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHE 509
V+++A S L +A G DG +RIWD C NF +H+
Sbjct: 68 VTSIASSASSL--VAVGYADGSIRIWDTEKGTCEVNFNSHK 106
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 31.1 bits (67), Expect = 0.83
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 345 AKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
++P I H D + T K S +L S +FDG +++WDL K
Sbjct: 362 SRPDIYVGKAHTDDI-TSVKFSSDGRILLSRSFDGSLKVWDLRQMK 406
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCT 488
LDGH VS +A PS L +G+ D +R+WD +CT
Sbjct: 147 LDGHEKLVSGIAL-PSGSDKLYTGSKDETLRVWDCASGQCT 186
>At2g46280.2 68415.m05756 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIK 583
G + AL +NPDGK F S G+D ++
Sbjct: 291 GPINALAFNPDGKSFSSGGEDGYVR 315
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEAVT 607
+ +LC D HF++ DKT K W +T
Sbjct: 196 ITSLCKAADDSHFLTGSLDKTAKLWDMRTLT 226
>At2g46280.1 68415.m05755 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 328
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIK 583
G + AL +NPDGK F S G+D ++
Sbjct: 291 GPINALAFNPDGKSFSSGGEDGYVR 315
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEAVT 607
+ +LC D HF++ DKT K W +T
Sbjct: 196 ITSLCKAADDSHFLTGSLDKTAKLWDMRTLT 226
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +3
Query: 366 LDGHRDGVSTMA----KHPSQLAVLASGAFDGEVRIWDLTVRKCTRNF 497
L GH V ++A K + + SG+ DGEV+ W ++V K +F
Sbjct: 365 LSGHTKPVKSLAAVREKELDDVVSIISGSLDGEVKCWKVSVTKPDNSF 412
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +3
Query: 387 VSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFV 500
V + HP V SG G +R+WD+ K +V
Sbjct: 249 VGVVKFHPDNCNVFLSGGSKGSLRLWDIRANKFVHEYV 286
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL--TVRKCTRNFVAH 506
L GH V+ + S + +LAS DG V +W++ +K R F+ H
Sbjct: 156 LTGHTKAVTAIDWSTSHVHLLASAGLDGAVYVWNVWSNDKKKVRAFLHH 204
>At5g21040.1 68418.m02503 F-box family protein / WD-40 repeat family
protein contains G-protein beta WD-40 repeats
Length = 539
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHED 512
GH ++++A + + SG++D VRIWD + KC + + H D
Sbjct: 255 GHEGPITSLAL---DMTSIFSGSWDMSVRIWDRSSMKCVKT-LRHSD 297
>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
family protein contains 4 (3 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 414
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 423 VLASGAFDGEVRIWDLTVRKCTRNFVAHE 509
++ASG+ D +V++WD+ KC HE
Sbjct: 229 IVASGSEDKKVKVWDVATGKCKVTMEHHE 257
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
GH V+++ HP + ++ S D E+R W + CTR
Sbjct: 734 GHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTR 773
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCT-RNFVAH 506
L+ H ++ + PSQL LA+ +FD VR+WD + + R F+ H
Sbjct: 689 LEEHTAMITDIRFSPSQLR-LATSSFDKTVRVWDADNKGYSLRTFMGH 735
>At2g41500.1 68415.m05127 WD-40 repeat family protein / small
nuclear ribonucleoprotein Prp4p-related similar to U4/U6
small nuclear ribonucleoprotein hPrp4 (GP:2708305) {Homo
sapiens}; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies)|19877698|gb|AU238529.1|AU238529
Length = 554
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 426 LASGAFDGEVRIWDLTVRKCTRNFVAH 506
LASG D + RIWDL +RK AH
Sbjct: 438 LASGGEDNQCRIWDLRMRKSLYIIPAH 464
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEE 622
V +L D +V D+TIK W + +EDEE
Sbjct: 511 VASLDITADSSCIATVSHDRTIKLWTSSGNDDEDEE 546
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 354 FIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
F+ + GH V ++ HP + +L S + ++R WD+ C R
Sbjct: 585 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINA-SCVR 629
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 354 FIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
F+ + GH V ++ HP + +L S + ++R WD+ C R
Sbjct: 587 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINA-SCVR 631
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 354 FIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
F+ + GH V ++ HP + +L S + ++R WD+ C R
Sbjct: 587 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINA-SCVR 631
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 354 FIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
F+ + GH V ++ HP + +L S + ++R WD+ C R
Sbjct: 587 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINA-SCVR 631
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 354 FIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
F+ + GH V ++ HP + +L S + ++R WD+ C R
Sbjct: 587 FLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINA-SCVR 631
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 426 LASGAFDGEVRIWDLTVRKCTRNFVAH 506
LASG D + RIWDL +RK AH
Sbjct: 187 LASGGEDNQCRIWDLRMRKLLYIIPAH 213
>At1g24130.1 68414.m03044 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats
(PF00400);similar to beta transducin-like protein
HET-D2Y (GI:17225210) [Podospora anserina].
Length = 415
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVSGITHHR 676
V AL + DGK S D++I W+ + +DEE L MSVV + HR
Sbjct: 281 VNALAISEDGKVLYSGACDRSILVWE-RLINGDDEE-----LHMSVVGALRGHR 328
>At5g24320.2 68418.m02866 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 698
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTW 589
G + A+ ++PDG++ S G+D ++ W
Sbjct: 252 GAILAMKFSPDGRYLASAGEDGVLRVW 278
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 318 NAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIW 464
N+V+L ++ + +G H + V+++ +P SG+ DG+VRIW
Sbjct: 377 NSVRLWQIGCEDCLGIFS-HNNYVTSVQFNPVDDDHFISGSIDGKVRIW 424
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 530 YNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEP 625
+ DGKH +S DD ++ W E P
Sbjct: 543 FTADGKHIVSACDDSSVYVWNCVGHDPEQSSP 574
>At5g24320.1 68418.m02865 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 694
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTW 589
G + A+ ++PDG++ S G+D ++ W
Sbjct: 252 GAILAMKFSPDGRYLASAGEDGVLRVW 278
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 318 NAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIW 464
N+V+L ++ + +G H + V+++ +P SG+ DG+VRIW
Sbjct: 377 NSVRLWQIGCEDCLGIFS-HNNYVTSVQFNPVDDDHFISGSIDGKVRIW 424
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +2
Query: 530 YNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEP 625
+ DGKH +S DD ++ W E P
Sbjct: 539 FTADGKHIVSACDDSSVYVWNCVGHDPEQSSP 570
>At4g01860.2 68417.m00244 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 411 SQLAVLASGAFDGEVRIWDLTVRKCTRNFV 500
S + +L SGA DG + WD+T KC FV
Sbjct: 1032 SDVYLLISGATDGSIGFWDVT--KCVEAFV 1059
>At4g01860.1 68417.m00243 transducin family protein / WD-40 repeat
family protein contains ten G-protein beta-subunit
(beta-transducin) WD-40 repeats
Length = 1308
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 411 SQLAVLASGAFDGEVRIWDLTVRKCTRNFV 500
S + +L SGA DG + WD+T KC FV
Sbjct: 1032 SDVYLLISGATDGSIGFWDVT--KCVEAFV 1059
>At4g00090.1 68417.m00009 transducin family protein / WD-40 repeat
family protein similar to Transducin beta-like 2 protein
(WS beta-transducin repeats protein) (WS-betaTRP)
(Williams-Beuren syndrome chromosome region 13 protein)
(SP:Q9Y4P3) {Homo sapiens}
Length = 430
Score = 29.9 bits (64), Expect = 1.9
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVR 479
L GH+ V+ + P+ ++ + DG +R+W++ VR
Sbjct: 285 LKGHKSAVTWLCFSPNSEQIITASK-DGSIRVWNINVR 321
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +2
Query: 524 LCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEP 625
LC++P+ + ++ D +I+ W DE+P
Sbjct: 295 LCFSPNSEQIITASKDGSIRVWNINVRYHLDEDP 328
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAH 506
L GH V + P ++LASG+ D V IW++ CT H
Sbjct: 114 LRGHTADVVDLNWSPDD-SMLASGSLDNTVHIWNMRTGMCTTVLRGH 159
>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to block of proliferation protein Bop1
(GI:1679772) [Mus musculus]
Length = 753
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTR 491
GH V++++ S +ASG+ DG VR+W++ +C +
Sbjct: 421 GHTGAVTSISTDSSG-EWIASGSTDGSVRMWEVETGRCLK 459
>At1g21650.1 68414.m02710 preprotein translocase secA family protein
contains Pfam profiles: PF01043 SecA protein, amino
terminal region, PF00400 WD domain, G-beta repeat,
PF00097 zinc finger, C3HC4 type (RING finger)
Length = 1579
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
+ GH+ VST+ VL SG++DG VR+W L+
Sbjct: 623 MSGHKSVVSTLVVVNG---VLYSGSWDGTVRLWSLS 655
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +3
Query: 324 VKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
V+L +V + +G H V+++ +P SG+ DG+VRIW+++
Sbjct: 351 VRLWKVGSNDCLGVF-AHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNIS 399
>At5g48800.1 68418.m06038 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 614
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 333 LILQHSKHAHIHGVLLVDASSGHSCEDFL 247
L+LQH +H H H L + SS SC +++
Sbjct: 9 LLLQHHQHLHHHQKLSLAKSSRQSCSEWI 37
>At5g15550.2 68418.m01821 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 402
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRN 494
H +S H S L S ++DG++ +WDL T++
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDLRTAVMTKH 396
>At4g29730.1 68417.m04233 WD-40 repeat family protein contains 5
WD-40 repeats (PF0400); similar to WD-40 repeat protein
MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 496
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 369 DGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWD 467
+GHR V + P + +V S A DG + IWD
Sbjct: 372 EGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 404
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCT 488
LDGH+ V+ +A PS L + + D VRIWD +CT
Sbjct: 140 LDGHQKVVTGIAL-PSGSDKLYTASKDETVRIWDCASGQCT 179
>At3g01340.1 68416.m00051 protein transport protein SEC13 family
protein / WD-40 repeat family protein similar to Protein
transport protein SEC13 SP|Q04491 {Saccharomyces
cerevisiae} and SEC13 (SP:P53024) [Pichia pastoris]
Length = 302
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMA-KHPSQLAVLASGAFDGEVRIW 464
+ L GHR V +A HP ++LAS ++DG++ +W
Sbjct: 49 LATLTGHRGPVWQVAWAHPKFGSLLASCSYDGQIILW 85
>At2g46290.1 68415.m05758 eukaryotic translation initiation factor 3
subunit 2, putative / eIF-3 beta, putative / eIF3i,
putative strong similarity to SP|Q38884 Eukaryotic
translation initiation factor 3 subunit 2 (eIF-3 beta)
(eIF3 p36) (eIF3i) (TGF-beta receptor interacting
protein 1) (TRIP-1) {Arabidopsis thaliana}; contains
Pfam PF00400: WD domain, G-beta repeat (5
copies)|19799885|gb|AU231175.1|AU231175
Length = 355
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEAVT 607
+ +LC D HF++ DKT K W +T
Sbjct: 223 ITSLCKAADDSHFLTGSHDKTAKLWDMRTLT 253
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIK 583
G + AL ++PDGK F S G+D ++
Sbjct: 318 GPINALAFSPDGKSFSSGGEDGYVR 342
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL----TVRKCTRNFVAHE 509
L+GH+D ++ M+ P +L +G D ++ +WD+ +C + F H+
Sbjct: 218 LEGHQDTITGMSLSPDGSYLLTNG-MDNKLCVWDMRPYAPQNRCVKIFEGHQ 268
>At1g48870.1 68414.m05474 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]; similar to rab11 binding protein GI:4512103
from [Bos taurus]
Length = 593
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTWK 592
G + L ++PDGK+ + G+D +K W+
Sbjct: 199 GKIWTLKFSPDGKYLATGGEDGVVKIWR 226
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAV----LASGAFDGEVRIWDLTVRK 482
L GH+ ++ ++ P L+ + + DG+ RIWD+T++K
Sbjct: 190 LTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKK 232
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Frame = +2
Query: 512 WVRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVSGITHHRNKPI- 688
WV + ++PDGKH +S I W + E T ++ +S H + P
Sbjct: 153 WVLTVAWSPDGKHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCR 212
Query: 689 -FATCGE--QCQLWENTRNEPI 745
F T + ++W+ T + I
Sbjct: 213 RFVTSSKDGDARIWDITLKKSI 234
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWK 592
V A+ ++PDG+ +S G D+ +K WK
Sbjct: 447 VFAVDWSPDGEKVVSGGKDRVLKLWK 472
>At5g50120.1 68418.m06207 transducin family protein / WD-40 repeat
family protein Similar to En/Spm-like transposon protein
(gi:2739374)[Arabidopsis thaliana]; similar to
GTP-binding regulatory protein and WD-repeat protein;
contains 7 WD-40 repeats
Length = 388
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = +3
Query: 315 LNAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWD 467
+N +++ + L H G++ +A + ++L SG DG + +W+
Sbjct: 238 INEENVKKKRKHSLVAILSEHNSGINALALSGTNGSLLHSGGSDGSILVWE 288
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
L GH M HP + S +DG+ +WD+
Sbjct: 582 LTGHTASTYVMDVHPFNPRIAMSAGYDGKTIVWDI 616
>At4g18905.1 68417.m02787 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 494
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +3
Query: 384 GVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
GVS+++ + S +LA+G+ D V++WDL+
Sbjct: 406 GVSSISYNISTPNLLATGSMDKSVKLWDLS 435
>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
family protein contains 5 (4 significant) WD-40 repeats;
similar to periodic tryptophan protein 1 homolog
(Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
(PIR2:I39360) [Homo sapiens]
Length = 461
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/36 (30%), Positives = 25/36 (69%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
++GH + ++++ + S +LA+G+ D V++WDL+
Sbjct: 365 INGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLS 400
>At3g16830.1 68416.m02149 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 387 VSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
V +M HPS +LA G GEV +W++ R+
Sbjct: 350 VISMDFHPSHHTLLAVGCSSGEVTLWEVGSRE 381
>At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogenesis
repressor; identical to COP1 regulatory protein/FUSCA
protein FUS1 GI:402685 SP:P43254
Length = 675
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +3
Query: 378 RDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHE 509
R +S ++ + + +AS ++G V +WD+T R+ + HE
Sbjct: 420 RSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHE 463
>At5g64730.1 68418.m08140 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to Will die slowly protein (SP:Q9V3J8) [Fruit
fly] {Drosophila m.]
Length = 299
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 458 YLGFNCTEVYKKFCCS*GWVRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTL 637
Y + V +KF G V A+ +N +S G D++++ W + + E + +T
Sbjct: 86 YWDVSTGRVIRKFRGHDGEVNAVKFNDSSSVVVSAGFDRSLRVWDCRSHSVEPVQIIDTF 145
Query: 638 LS--MSVV 655
L MSVV
Sbjct: 146 LDTVMSVV 153
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTW 589
G V A +N DG + ++ G D+TI+ W
Sbjct: 19 GAVLAARFNGDGNYALTCGKDRTIRLW 45
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8
WD-40 repeats (PF00400) (2 weak)
Length = 1108
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 387 VSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
V++M +P Q +L G+ GE+ +W+L R+
Sbjct: 348 VTSMEFYPMQNTLLLVGSATGEITLWELAARE 379
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIW 464
IGC GH V + P+ + ASG+ DG +RIW
Sbjct: 263 IGCNKGHHGPVHCVRFAPTGESY-ASGSEDGTIRIW 297
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Frame = +3
Query: 210 PRRLFARYETRYSENPRNYDPSLHPLEAPREYVRALNAVKLERVFAKPFIGCLD--GHRD 383
P LF E + + D L + +++ + + K R++ CL H D
Sbjct: 495 PDSLFGLSEKPFCSFQGHVDDVLDLAWSKSQHLLSSSMDKTVRLWNLSSQTCLKVFSHSD 554
Query: 384 GVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRNFVAHE 509
V+ + +P SG+ D +VR+W + R+ + HE
Sbjct: 555 YVTCIQFNPVDDRYFISGSLDAKVRVWSIPDRQVVDWYDLHE 596
>At2g17470.1 68415.m02017 expressed protein contains Pfam profile
PF01027: Uncharacterized protein family UPF0005
Length = 538
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +2
Query: 539 DGKHFMSVGDDKTIKTW-KAEAVT-EEDEEPTNTLLSMSVVSGITHHRNKPIFATCGEQC 712
D K ++ V + T KAEA EE+ T + S+S + N A+ ++
Sbjct: 374 DSKSYLLVNSESWAATKEKAEAEEYEEEAHETKVIKSLSQIWDTNSSSNNQNPASGNDES 433
Query: 713 QLWENTRN 736
Q+WE+T +
Sbjct: 434 QIWESTES 441
>At2g01330.1 68415.m00050 transducin family protein / WD-40 repeat
family protein contains 10 WD-40 repeats (PF00400);
similar to 66kDa stress protein (SWISS-PROT: P90587)[
Physarum polycephalum (Slime mold)]
Length = 474
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +2
Query: 509 GWVRALCYNPDGKHFMSVGDDKTIKTWK 592
G + A+ ++PD K ++V DK+ K W+
Sbjct: 97 GSIYAVSWSPDSKRVLTVSADKSAKVWE 124
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/29 (55%), Positives = 18/29 (62%)
Frame = +3
Query: 384 GVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
G+ K P+QLA SGA DG V IWDL
Sbjct: 120 GLEFNVKSPNQLA---SGADDGTVCIWDL 145
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 357 IGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRN 494
+ L+GH++ + +A P L S + DG + IWD +C R+
Sbjct: 180 VAALEGHKNDIKGIAL-PQGSDKLFSVSGDGTLLIWDCNSGQCVRS 224
>At5g18525.1 68418.m02190 WD-40 repeat family protein contains Pfam
profile PF00400: WD domain, G-beta repeat
Length = 580
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASG---AFDGEVRIWDLTVRKCTRNFVAHED 512
H + ++ + V SG F G V+ W+L C ++ AHE+
Sbjct: 232 HHGALRSLVVSEDECTVFTSGIDPGFKGSVQKWELASLSCVSSYHAHEE 280
>At5g15550.1 68418.m01820 transducin family protein / WD-40 repeat
family protein similar to YTM1 - Homo sapiens,
EMBL:AF242546; contains Pfam PF00400: WD domain, G-beta
repeat (7 copies,1 weak);
Length = 433
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
H +S H S L S ++DG++ +WDL
Sbjct: 357 HSSWISACKWHKSSWFHLLSASYDGKIMLWDL 388
>At5g02430.1 68418.m00167 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); rab11 binding protein, Bos
taurus, EMBL:AF117897
Length = 905
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRK 482
L H D V+ + +P SG+ D ++RIW+++ R+
Sbjct: 555 LFAHNDYVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQ 593
>At4g03020.1 68417.m00410 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to L. erythrorhizon LEC14B, GenBank accession
number Q40153
Length = 493
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +2
Query: 539 DGKHFMSVGDDKTIKTW 589
DG++F+S G D+TIK W
Sbjct: 329 DGRYFISNGKDQTIKLW 345
>At2g46280.3 68415.m05757 eukaryotic translation initiation factor 3
subunit 2 / TGF-beta receptor interacting protein 1 /
eIF-3 beta / eIF3i / TRIP-1 (TIF3I1) identical to
eukaryotic translation initiation factor 3 subunit 2
(SP:Q38884) {Arabidopsis thaliana}; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies)
Length = 254
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEAVT 607
+ +LC D HF++ DKT K W +T
Sbjct: 196 ITSLCKAADDSHFLTGSLDKTAKLWDMRTLT 226
>At2g19520.1 68415.m02281 WD-40 repeat protein (MSI4) contains 6 (4
significant) WD-40 repeats (PF0400); identical to WD-40
repeat protein MSI4 (SP:O22607) [Arabidopsis thaliana]
Length = 507
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 369 DGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWD 467
+GH+ V + P + +V S A DG + IWD
Sbjct: 383 EGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 415
>At2g16780.1 68415.m01924 WD-40 repeat protein (MSI2) contains 5
WD-40 repeats (PF0400); identical to WD-40 repeat
protein MSI2 (SP:O22468) [Arabidopsis thaliana] WD-40
repeats (PF0400);
Length = 415
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/65 (21%), Positives = 27/65 (41%)
Frame = +3
Query: 315 LNAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCTRN 494
++A ++V F+ +GH ++ ++ H + S DG + IWD +
Sbjct: 198 VSATPQDKVLNAMFV--YEGHESAIADVSWHMKNENLFGSAGEDGRLVIWDTRTNQMQHQ 255
Query: 495 FVAHE 509
HE
Sbjct: 256 VKVHE 260
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 521 ALCYNPDGKHFMSVGDDKTIKTWKAE 598
A +NP G F + DKT+K W E
Sbjct: 701 ACSWNPFGHQFATSSRDKTVKIWSVE 726
>At5g63010.1 68418.m07905 WD-40 repeat family protein contains 4
WD-40 repeats (PF00400);low similarity to
photomorphogenesis repressor (COP1) GI:2702280
[Arabidopsis thaliana] and COP1 GI:11127996 [Ipomoea
nil]
Length = 343
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 375 HRDGVSTMAKHPSQLAVLASGAFDGEVRIWD 467
H GV ++ +PS + +G++D +R+WD
Sbjct: 209 HTMGVCCISSNPSDPYSIFTGSYDETLRVWD 239
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 366 LDGHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLTVRKCT 488
L GH D V + + S A+D +++WDL CT
Sbjct: 311 LTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLWDLHKGYCT 351
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 479 EVYKKFCCS*GWVRALCYNPDGKHFMSVGDDKTIKTW 589
E+YKK G V + +N +G +S DD+ + W
Sbjct: 50 EIYKKLEKHKGCVNTVSFNAEGDVLISGSDDRRVVLW 86
>At4g02290.1 68417.m00310 glycosyl hydrolase family 9 protein
similar to endo-1,4-beta glucanase; ATCEL2 GI:3132891
from [Arabidopsis thaliana]
Length = 516
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 622 FLIFLCDSFSFPRFNSFIITNTHK 551
F FLC+ FS+P +S T+ H+
Sbjct: 22 FFFFLCNGFSYPTTSSLFNTHHHR 45
>At3g26480.1 68416.m03301 transducin family protein / WD-40 repeat
family protein contains Pfam profile: PF00400 WD domain,
G-beta repeat (5 copies, 2 below cutoff); related to
LACK protective antigen (GI:13625467) [Leishmania
donovani]
Length = 764
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 318 NAVKLERVFAKPFIGCLDGHRDGVSTMAKHPSQLAVLA---SGAFDGEVRIWDLTVRKCT 488
N V + V I L+ H V+++ PS ++ + + DG++RIW+ + K
Sbjct: 28 NTVSVYSVATGLKITSLEDHTAPVTSVIVDPSSDETVSYCWTSSLDGKIRIWEFSAPKLL 87
Query: 489 RNFVAH 506
+ F H
Sbjct: 88 KIFDTH 93
>At3g20740.1 68416.m02624 fertilization-independent endosperm
protein (FIE) contains 6 WD-40 repeats (PF00400);
identical to fertilization-independent endosperm protein
(GI:4567095) [Arabidopsis thaliana]
Length = 369
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDL 470
GHR V ++ HPS + AS D ++IW +
Sbjct: 172 GHRYEVLSVDFHPSDIYRFASCGMDTTIKIWSM 204
>At3g13300.2 68416.m01675 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1309
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
GH V+ MA + +LAS + DG+V +W ++
Sbjct: 200 GHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKIS 233
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
GH V+ MA + +LAS + DG+V +W ++
Sbjct: 235 GHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKIS 268
>At3g13290.1 68416.m01673 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1322
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 372 GHRDGVSTMAKHPSQLAVLASGAFDGEVRIWDLT 473
GH V+ MA + +LAS + DG+V +W ++
Sbjct: 219 GHSQRVTDMAFFAEDVHLLASVSLDGKVFVWKIS 252
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/70 (21%), Positives = 30/70 (42%)
Frame = +2
Query: 515 VRALCYNPDGKHFMSVGDDKTIKTWKAEAVTEEDEEPTNTLLSMSVVSGITHHRNKPIFA 694
VR + Y+ ++ DKTIK W + + T + V+ ++ N+ + A
Sbjct: 100 VRCVEYSYAAGQVITGSWDKTIKCWDPRGASGTERTQIGTYMQPERVNSLSLVGNRLVVA 159
Query: 695 TCGEQCQLWE 724
T G +++
Sbjct: 160 TAGRHVNIYD 169
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,880,816
Number of Sequences: 28952
Number of extensions: 318372
Number of successful extensions: 1294
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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