Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30581
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    29   0.61 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   1.9  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    27   2.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   4.3  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   5.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   5.7  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   9.9  
SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces pomb...    25   9.9  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    25   9.9  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 184  APCITRHVYQILKLPKYN*MHTLTKAILNNLPKPTLRAHGYVT*AHRFLL 35
            A C+    + ILK PKY  +H    A+L  L K    A+  +  A  F L
Sbjct: 1213 AYCLAELCFAILKSPKYKDVHVKVNAVLAGLQKNDPSAYSNMLEATHFEL 1262


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 61  HNRVLLKWVLVDCLRLPL*GYA-FNYILVVLKSG 159
           HN  + ++VL D L+LP   YA F +++ VL SG
Sbjct: 511 HNPDIQRFVLKDVLKLPENRYATFEHLIRVLSSG 544


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 544 RTRNDVFRATSTYTIRSTGSGMYDNSIYYQLL 449
           RT  DVFRAT  +     G+  Y  S+Y QL+
Sbjct: 426 RTSADVFRATLFFGFFLGGAHSYCRSVYAQLV 457


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
 Frame = -2

Query: 414 N*TNALMDKQTNSSIEQRRLGIVDENV-EFAIKTVI---LQLRNVSLNVNWTLYIACFAF 247
           N  N L DK+ +S+  ++   ++ + + E   +T     L   + + +++ +++I+  + 
Sbjct: 414 NLINTLQDKKKSSTFSKKDREVLLKKISEIDSQTSFEQCLAYADSAADLDSSVFISLLSK 473

Query: 246 IGRYLQFLLKLVTNGSEAI 190
            G  + FLL  + NGSE I
Sbjct: 474 FGDKIPFLLFCIANGSERI 492


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
 Frame = -2

Query: 300 RNVSLNVNWTLYIA---------CFAFIGRYLQFLLKLVTNGSEAIPLRLASQ 169
           RN+SL V   LY+            + +G  L FL+KL T+ +E I    ASQ
Sbjct: 498 RNLSLTVQTVLYLKNRNFQTGNEVMSILGPCLSFLMKLSTHKNERIACLSASQ 550


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 252 RNMQCKASNLHLTIHCVIVK*LF*LQIQRFRPRFPNAS 365
           RN+  K+S L      V++  L  L I RF P +P+ S
Sbjct: 636 RNLSAKSSALEKDTRRVVLHALLGLTITRFTPLWPDLS 673


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 7   RADSQEVLPPVRTCVLM*HNRVLLKWVLVDCLRL 108
           +A  Q V P ++T +   ++  LL+WVLV    L
Sbjct: 392 KAGRQRVAPHIKTYMRFSNDGELLRWVLVTSANL 425


>SPAC11E3.10 |||VanZ-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 537 VMTYLGRRQLIPFGLQDRVCMIIVFII 457
           +  YLG    +P  + D+VC   VF +
Sbjct: 25  ISAYLGFAPALPVPINDKVCHFFVFFL 51


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -2

Query: 426 QIKLN*TNALMDKQTNSSIEQRRLGIVDENVEFAIKTVILQLRNVSLNVNWTL 268
           QI  N T A + K  NSS+ +   G+  E    A +   L  +N   NVN +L
Sbjct: 107 QIDANDTRAWILKMRNSSLNKNGNGLNFEAKNDAPRRSTLHSQNAGPNVNSSL 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,798
Number of Sequences: 5004
Number of extensions: 49320
Number of successful extensions: 108
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)