Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30581
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732     29   2.6  
09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555     29   4.5  
04_04_0188 - 23433753-23436572                                         28   7.8  

>02_04_0202 - 20876793-20877142,20877380-20879512,20884063-20884732
          Length = 1050

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/29 (34%), Positives = 22/29 (75%)
 Frame = +2

Query: 317 VLIANSTFSSTIPKRLCSIDEFVCLSINA 403
           ++++N+  SS+IPK +CS+   V L++++
Sbjct: 155 LVLSNNFLSSSIPKEICSLKRLVSLNLSS 183


>09_06_0047 + 20470756-20470817,20472927-20473833,20473932-20474555
          Length = 530

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 549 SGGPVMTYLGRR-QLIPFGLQDRVCMIIVFII 457
           +GGP + + G   QL+PFG   R+C  I F +
Sbjct: 445 AGGPAVDFRGNDYQLVPFGAGRRICPGISFAV 476


>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 285 NVNWTLYIACFAFIGRYLQFLLKLVTNGSEAI 190
           +V+WT  IAC+A   RY + + K  T   E I
Sbjct: 431 HVSWTTIIACYAQSSRYSEAIGKFRTAQKEGI 462


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,399,638
Number of Sequences: 37544
Number of extensions: 312313
Number of successful extensions: 606
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)