Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30581
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41542| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_41542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -3

Query: 671 GEKLSGLCLWVNSLVEPFVESGG 603
           G  + G+CLWV S++E F++ GG
Sbjct: 14  GSSVPGMCLWVVSIIE-FLQPGG 35


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 665 KLSGLCLWVNSLVEPFVESGGFDE 594
           K S LC+W+NS + P++  G  DE
Sbjct: 891 KYSHLCIWLNSFLNPYL-YGALDE 913


>SB_11292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1529

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 333  EFAIKTVILQLRNVSLNVNWTLYIACFAFIGRYLQFLLKLVTNGSE-AIPLRLASQ 169
            E A+   I QLR+  L  NW    A +  + + L  L KLV  G+   IP +L  Q
Sbjct: 1284 ESAVDPEIKQLRDCILTENWDGAPAQYKAVRQELSTLGKLVLRGTRLLIPTKLRKQ 1339


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,263,456
Number of Sequences: 59808
Number of extensions: 375722
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)