Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30581
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated io...    32   0.32 
U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    28   6.9  

>U42839-9|AAC69013.3|  355|Caenorhabditis elegans Ligand-gated ion
           channel protein 3 protein.
          Length = 355

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 303 LRNVSLNVNWTLYIACFAFIGRYLQFL 223
           L+N S N  W L ++C+   GR+L FL
Sbjct: 228 LKNYSPNEEWALQVSCYKGFGRFLNFL 254


>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -1

Query: 352 NRGRKR*ICN*NSYFTITQCIVKCKLDALHCMFRFYRALPSVFVKARYQRFRSDSLAPCI 173
           +R  +R +   N YFT+   I      AL   F     + +VF    YQ+  +D    CI
Sbjct: 268 DRKDRRRVAEANKYFTLESAI------ALFLSFFINLFVVAVFAHGLYQKTNADVREMCI 321

Query: 172 TRH 164
            RH
Sbjct: 322 ARH 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,207,853
Number of Sequences: 27780
Number of extensions: 280377
Number of successful extensions: 527
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)