Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30581
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32290.1 68414.m03975 hypothetical protein                          29   3.7  
At4g03990.1 68417.m00569 hypothetical protein similar to At2g049...    28   4.9  
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila...    28   6.5  
At3g27530.1 68416.m03441 vesicle tethering family protein contai...    27   8.6  
At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transfera...    27   8.6  
At1g10095.1 68414.m01138 protein prenyltransferase alpha subunit...    27   8.6  

>At1g32290.1 68414.m03975 hypothetical protein
          Length = 80

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 656 GLCLWVNSLVEPFVESGGFDEGGDRCLW 573
           G C W  ++V   V++G    GG RC W
Sbjct: 25  GRCWWCPAVVVAGVDNGRIGGGGGRCWW 52


>At4g03990.1 68417.m00569 hypothetical protein similar to At2g04970,
           At2g15200, At1g32830, At2g14140, At3g30450, At5g34895,
           At3g47270, At2g02200
          Length = 343

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 372 IEQRRLGIVDENVEFAIKTVILQLRNVSLNVNW 274
           +EQ   G +D  ++ AI+TV+ Q R   +NV W
Sbjct: 311 VEQGHQGRIDHVLKPAIETVVHQSRKKEINVLW 343


>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
           to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
           sapiens]
          Length = 247

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 247 YRALPSVFVKARYQRFRSDSLAPCITRHVYQILKLPKYN*MHTLTKAILNNL 92
           +RA     ++ + +  R  S  P +   +  I+++   N MH  TK ILNNL
Sbjct: 59  FRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNL 110


>At3g27530.1 68416.m03441 vesicle tethering family protein contains
           Pfam PF04869: Uso1 / p115 like vesicle tethering
           protein, head region and PF04871: Uso1 / p115 like
           vesicle tethering protein, C terminal region
          Length = 914

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = -2

Query: 324 IKTVILQLRNVSLNVNWTLYIACFAFIGRYLQFLLKLVTNGSEAIPLR-LAS 172
           I+ +IL+L  V+  V+    + CF     +L FLL+LVT+ +  + +R LAS
Sbjct: 522 IQQIILKLL-VTWTVDCPTAVQCFLDSRHHLTFLLELVTDPAATVCIRGLAS 572


>At2g23260.1 68415.m02778 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 456

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 396 MDKQTNSSIEQRRLGIVDENVEFAIKTVILQLRNVSLNVNWTL 268
           +DKQ  SS+     G + E +E  ++T+   L+N  L   W +
Sbjct: 263 LDKQARSSVVYISFGSMLETLENQVETIAKALKNRGLPFLWVI 305


>At1g10095.1 68414.m01138 protein prenyltransferase alpha
           subunit-related contains weak hit to Pfam profile
           PF01239: Protein prenyltransferase alpha subunit repeat
          Length = 431

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = -2

Query: 486 RVCMIIVFIINY*IKLPXSVQIKLN*TNALMDKQTNSSIEQRRLGIVDENVEFAIKTVIL 307
           R    +  I+   +K+  S+ +K    ++  DK     I +  L   +E VE  +    L
Sbjct: 259 RAAYSVDVIVRLMLKILESLYVK---GSSAYDKTEARKIWKEELDWNEELVERYVGREAL 315

Query: 306 QLRNVSLNVNWTLYIAC 256
            L    L++NW +Y AC
Sbjct: 316 WLHRRFLSLNWIMYFAC 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,253,674
Number of Sequences: 28952
Number of extensions: 256461
Number of successful extensions: 538
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)