Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30579
(713 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 152 7e-36
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 152 7e-36
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 126 7e-28
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 114 2e-24
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 108 2e-22
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 100 4e-20
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 94 3e-18
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 76 8e-13
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 75 1e-12
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 75 1e-12
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 62 1e-08
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 62 1e-08
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 62 2e-08
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 60 4e-08
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 59 9e-08
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 53 8e-06
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 53 8e-06
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 53 8e-06
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 51 3e-05
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 50 4e-05
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 48 2e-04
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 47 5e-04
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 46 0.001
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 43 0.007
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 42 0.015
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 40 0.061
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 35 2.3
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 34 3.0
UniRef50_A7DRV5 Cluster: Multi-sensor signal transduction histid... 34 4.0
UniRef50_UPI00015BC67A Cluster: UPI00015BC67A related cluster; n... 33 5.3
UniRef50_A7UFC3 Cluster: Formate dehydrogenase; n=1; Heliobacill... 33 5.3
UniRef50_A6BE46 Cluster: Putative uncharacterized protein; n=2; ... 33 5.3
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 152 bits (369), Expect = 7e-36
Identities = 70/96 (72%), Positives = 84/96 (87%), Gaps = 1/96 (1%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V+F+VARAGQKGYHHRTE+NKKIY+IGQG KDGK+IKNNAST+YDLS+KSI P+GGF
Sbjct: 262 VAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFV 321
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL-ESLCVFIQR 224
HYGEV NDFVM+KGC +G KKR++TL +SL V +R
Sbjct: 322 HYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKR 357
Score = 101 bits (243), Expect = 1e-20
Identities = 45/66 (68%), Positives = 50/66 (75%)
Frame = -3
Query: 705 WAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIG 526
WARE LE+ +PV+ VF QDEMID I TSRWHTKKLPRKTH+GLRKVACIG
Sbjct: 196 WARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIG 255
Query: 525 AWHPSR 508
AWHP+R
Sbjct: 256 AWHPAR 261
Score = 90.2 bits (214), Expect = 4e-17
Identities = 46/67 (68%), Positives = 52/67 (77%)
Frame = -1
Query: 293 QGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
+G + GT K LRKSL V TKR ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LK
Sbjct: 334 KGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393
Query: 113 KDRIREE 93
KDRI +E
Sbjct: 394 KDRIAKE 400
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 152 bits (369), Expect = 7e-36
Identities = 68/96 (70%), Positives = 82/96 (85%), Gaps = 1/96 (1%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V ++ARAGQKGYHHRTE+NKKI+RIG+G H +DGK++KNNAST YD++ KSITP+GGFP
Sbjct: 262 VGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFP 321
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL-ESLCVFIQR 224
HYGEVNNDFVM+KGC G KKR+ITL +SL V R
Sbjct: 322 HYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSR 357
Score = 99.1 bits (236), Expect = 9e-20
Identities = 45/68 (66%), Positives = 50/68 (73%)
Frame = -3
Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
V WA+ LEK +PV SVF+Q E+ID I TSRWHTKKLPRKTHKGLRKVAC
Sbjct: 194 VAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLRKVAC 253
Query: 531 IGAWHPSR 508
IGAWHP+R
Sbjct: 254 IGAWHPAR 261
Score = 77.0 bits (181), Expect = 4e-13
Identities = 43/82 (52%), Positives = 49/82 (59%)
Frame = -1
Query: 341 GRFPPLW*SKQRFCDDQGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 162
G FP F +G + GT K LRKSL VH R A+E I LKFIDT+SKFGHG
Sbjct: 318 GGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHG 377
Query: 161 RFQTPADKAAFMGTLKKDRIRE 96
RFQT +K AFMG KK +E
Sbjct: 378 RFQTAQEKRAFMGPQKKHLEKE 399
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 126 bits (303), Expect = 7e-28
Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 1/101 (0%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V+FTVARAGQKG+HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP
Sbjct: 214 VAFTVARAGQKGFHHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFP 270
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL-ESLCVFIQRGLH*K 209
YG VN D++M++G +GPKKR+ITL +SL +R H K
Sbjct: 271 RYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEK 311
Score = 79.8 bits (188), Expect = 6e-14
Identities = 45/82 (54%), Positives = 52/82 (63%)
Frame = -1
Query: 341 GRFPPLW*SKQRFCDDQGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 162
G FP Q + +G + G K LRKSL TKR A EKINLK+IDTSSK GHG
Sbjct: 267 GGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHG 326
Query: 161 RFQTPADKAAFMGTLKKDRIRE 96
RFQT A+K AFMG LK+D + E
Sbjct: 327 RFQTTAEKRAFMGKLKRDFLAE 348
Score = 77.8 bits (183), Expect = 2e-13
Identities = 36/52 (69%), Positives = 37/52 (71%)
Frame = -3
Query: 663 VFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSR 508
V A +MID I TSRWHTKKLPRKTHKGLRKVACIGAWHPSR
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSR 213
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 114 bits (275), Expect = 2e-24
Identities = 54/91 (59%), Positives = 67/91 (73%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V+F+VA+ GQKGYHH + NKKI +IGQG KDGK+IKNNA TEY LS+KSI +GGF
Sbjct: 241 VTFSVAQVGQKGYHHNGD-NKKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFV 299
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITLESLCV 236
HYGEV NDF+ +KGC + KK + + L V
Sbjct: 300 HYGEVTNDFIRLKGCAVRTKKHLTICKYLLV 330
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/52 (51%), Positives = 33/52 (63%)
Frame = -1
Query: 248 KSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
K L V T + AL+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 326 KYLLVQTIQWALKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 108 bits (259), Expect = 2e-22
Identities = 49/86 (56%), Positives = 64/86 (74%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V +TVARAGQ GYHHRT +NKKIY++G+ + + N A+T YDL+ K+ITPMGGF
Sbjct: 316 VMYTVARAGQHGYHHRTHLNKKIYQLGRAVSMEP-----NQATTAYDLTAKTITPMGGFV 370
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
YG V ND+VM+KG GP++R+ITL
Sbjct: 371 GYGTVRNDYVMLKGSVAGPRRRVITL 396
Score = 73.7 bits (173), Expect = 4e-12
Identities = 34/68 (50%), Positives = 40/68 (58%)
Frame = -3
Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
++ A+ LEK + +DSVF Q E D RW LPRKTH+GLRKVAC
Sbjct: 248 IELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPRKTHRGLRKVAC 307
Query: 531 IGAWHPSR 508
IGAWHPSR
Sbjct: 308 IGAWHPSR 315
Score = 69.7 bits (163), Expect = 7e-11
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = -1
Query: 254 LRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 93
LR+ + T R EKI LKFIDTSSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 396 LRRPMAPQTSRKLTEKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 100 bits (239), Expect = 4e-20
Identities = 50/83 (60%), Positives = 64/83 (77%)
Frame = -2
Query: 499 TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYG 320
+VA A QKG HH T +NKKIY+IGQG K+GK+IKNNAST+Y KSI+P+GG H G
Sbjct: 214 SVAWARQKGCHHCT-INKKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCG 269
Query: 319 EVNNDFVMIKGCCMGPKKRIITL 251
+V NDFVM+K C +G KKR+++L
Sbjct: 270 KVTNDFVMLKDCLVGTKKRVLSL 292
Score = 67.7 bits (158), Expect = 3e-10
Identities = 34/59 (57%), Positives = 40/59 (67%)
Frame = -1
Query: 284 LHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 108
L GT K L KSL + TK+ L+K+N KFIDT+SKFGHG FQ +K FMG LKKD
Sbjct: 282 LVGTKKRVLSLCKSLLMRTKQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -3
Query: 705 WAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACI 529
WA + LE+ +PV+ +F + I +S W+TKK+P KTH+ + ACI
Sbjct: 152 WAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACI 209
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 94.3 bits (224), Expect = 3e-18
Identities = 42/62 (67%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
Frame = -2
Query: 406 GKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITL-ESLCVFI 230
GK+IKNNAST+YDLS+KSI P+GGF HYGEV NDF+M+KGC +G KKR++TL +SL V
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 229 QR 224
+R
Sbjct: 61 KR 62
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 76.2 bits (179), Expect = 8e-13
Identities = 40/62 (64%), Positives = 45/62 (72%)
Frame = -1
Query: 278 GT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIR 99
GT K L KS V TK ALEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+
Sbjct: 89 GTKKQVLTLCKSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQTA 148
Query: 98 EE 93
+E
Sbjct: 149 KE 150
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 75.4 bits (177), Expect = 1e-12
Identities = 40/86 (46%), Positives = 55/86 (63%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V++T++RAGQKGYH RT NKKIY+IG +++ N+ S D KS+ MGGF
Sbjct: 244 VAWTISRAGQKGYHKRTLFNKKIYKIGS---EENFSYYSNSLS---DSIVKSVNCMGGFK 297
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
+G +NND+++IKG G KR I L
Sbjct: 298 KFGFINNDYLIIKGSMTGSSKRPILL 323
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/59 (49%), Positives = 38/59 (64%)
Frame = -3
Query: 684 KPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIGAWHPSR 508
K I ++S+F ++++ID I SRW +LPRKTH+GLRKVACIG W PSR
Sbjct: 185 KKIYINSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSR 243
Score = 48.0 bits (109), Expect = 2e-04
Identities = 24/56 (42%), Positives = 36/56 (64%)
Frame = -1
Query: 293 QGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFM 126
+G + G+ K LRK+++ EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 310 KGSMTGSSKRPILLRKNIKNKISSVITEKIILKYVDTSSKRGHGRYESSADKFSKM 365
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 75.4 bits (177), Expect = 1e-12
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V +TV AGQ G+HHRTE+NK++ IG+ +GK +K + +TE + ITP GGFP
Sbjct: 264 VMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGK-LKLDENTEIE-----ITPKGGFP 312
Query: 328 HYGEVNNDFVMIKGCCMGPKKRII 257
HYG V +DF+MI G G KRII
Sbjct: 313 HYGIVRSDFMMIAGSVPGAIKRII 336
Score = 46.4 bits (105), Expect = 7e-04
Identities = 23/66 (34%), Positives = 30/66 (45%)
Frame = -3
Query: 705 WAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACIG 526
+ +E L K + V V + E++D I RW K K KG RKV IG
Sbjct: 198 YIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRRKVGSIG 257
Query: 525 AWHPSR 508
WHP+R
Sbjct: 258 PWHPAR 263
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 62.5 bits (145), Expect = 1e-08
Identities = 37/84 (44%), Positives = 47/84 (55%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V +TV AGQ GYH RTE NK+I +IG+ DG+ +TP GGF
Sbjct: 249 VRWTVPMAGQVGYHQRTEHNKRILKIGE-----DGE---------------EVTPRGGFV 288
Query: 328 HYGEVNNDFVMIKGCCMGPKKRII 257
+YG V D++MI G GPKKR+I
Sbjct: 289 NYGVVRGDYIMIHGTVPGPKKRLI 312
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 62.1 bits (144), Expect = 1e-08
Identities = 37/81 (45%), Positives = 45/81 (55%)
Frame = -2
Query: 499 TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYG 320
T+ +AGQ GYH RTE NK+I RI A E E ITP GGF HYG
Sbjct: 249 TIRQAGQTGYHQRTEYNKRILRI---------------AGEE----ESQITPAGGFLHYG 289
Query: 319 EVNNDFVMIKGCCMGPKKRII 257
EV N +++I+G GP KR+I
Sbjct: 290 EVKNHYMIIQGSLPGPAKRLI 310
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 61.7 bits (143), Expect = 2e-08
Identities = 36/86 (41%), Positives = 46/86 (53%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V ++V GQ GYH RTE NK+I +IG NN ITP GGF
Sbjct: 243 VMWSVPMPGQMGYHQRTEYNKRILKIG------------NNGD--------EITPKGGFL 282
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
HYG + N++V++KG GP KR+I L
Sbjct: 283 HYGVIRNNYVVLKGSVQGPAKRLIVL 308
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 60.5 bits (140), Expect = 4e-08
Identities = 32/81 (39%), Positives = 44/81 (54%)
Frame = -2
Query: 499 TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYG 320
T+ +AGQ GYH RTE+NK+I RI E +TP GGF HYG
Sbjct: 269 TIRQAGQMGYHKRTELNKRILRISNP-------------------GESDVTPAGGFLHYG 309
Query: 319 EVNNDFVMIKGCCMGPKKRII 257
EV N +++++G GP KR++
Sbjct: 310 EVTNPYMVLEGSLPGPAKRLL 330
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 59.3 bits (137), Expect = 9e-08
Identities = 33/86 (38%), Positives = 48/86 (55%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
+ + V + GQ GYH RTE NK+I ++G D +E+ ITP GGF
Sbjct: 246 IRWQVPQLGQTGYHQRTEYNKRILKMG-------------------DKAEE-ITPAGGFL 285
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
HYG + ND++M+KG GP KR++ +
Sbjct: 286 HYGLIRNDYIMLKGSIPGPVKRMVRI 311
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 52.8 bits (121), Expect = 8e-06
Identities = 33/88 (37%), Positives = 47/88 (53%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V +TV RAGQ G+H R E +K+I +G +T+ D + I P GGF
Sbjct: 242 VMYTVPRAGQFGFHQRVEYDKRIMIMG---------------NTDDD--KLKINPDGGFK 284
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITLES 245
H+G V DF+++KG G +R+I L S
Sbjct: 285 HFGLVKGDFIVLKGSVPGAYRRLIKLRS 312
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 52.8 bits (121), Expect = 8e-06
Identities = 29/88 (32%), Positives = 46/88 (52%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V +TV RAGQ G+H R E NK+I +G G+ + +I P GG+
Sbjct: 240 VMYTVPRAGQMGFHQRIEYNKRIMAVGSA-----GE-------------DDAINPSGGYK 281
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITLES 245
H+G V D++++KG G +R++ L +
Sbjct: 282 HFGMVKGDYIVLKGSVPGTYRRLVKLRA 309
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 52.8 bits (121), Expect = 8e-06
Identities = 30/84 (35%), Positives = 43/84 (51%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
V TV + GQ GYH RTE+NK++ I G TP GGFP
Sbjct: 245 VRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------------TPDGGFP 283
Query: 328 HYGEVNNDFVMIKGCCMGPKKRII 257
+YGEV+ + ++KG GP++R++
Sbjct: 284 NYGEVDGPYTLVKGSVPGPEQRLV 307
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 50.8 bits (116), Expect = 3e-05
Identities = 30/86 (34%), Positives = 44/86 (51%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
+ F GQ G+H RTE NK+I ++G D + S K I P GG+P
Sbjct: 240 IMFYTPFPGQLGFHQRTEYNKRILKVG------DAE------------SLKEINPPGGWP 281
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
HYG V + F++++G G KR++ L
Sbjct: 282 HYGLVRSQFIIVEGSVPGAVKRLVRL 307
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 50.4 bits (115), Expect = 4e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Frame = +1
Query: 517 MPSSNAGNFPKXXXXXXXXXXXXPTRSDTFVSFALGDTNAVNHFILGKHRIDRDRFLQMF 696
MPS+N N + P+ DT + GD+N +NHFIL ++R++R+ F ++F
Sbjct: 19 MPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVF 78
Query: 697 SGP 705
GP
Sbjct: 79 FGP 81
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 48.0 bits (109), Expect = 2e-04
Identities = 30/78 (38%), Positives = 38/78 (48%)
Frame = -2
Query: 484 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 305
GQ G+H RTE NK+I +IG K I P GGF YG V N
Sbjct: 268 GQLGFHRRTEYNKRIIKIGD--------------------EPKEINPAGGFVRYGIVRNT 307
Query: 304 FVMIKGCCMGPKKRIITL 251
+V+++G +G KKR I L
Sbjct: 308 YVLLEGSILGSKKRPIFL 325
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 46.8 bits (106), Expect = 5e-04
Identities = 27/78 (34%), Positives = 40/78 (51%)
Frame = -2
Query: 484 GQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNND 305
GQ G+H RTE NK+I +IG ++ +TP GGF YG V
Sbjct: 310 GQMGFHRRTEYNKRIIKIG--------------------INGWEVTPKGGFLGYGIVYGP 349
Query: 304 FVMIKGCCMGPKKRIITL 251
++M+ G +GP+KR++ L
Sbjct: 350 YIMLHGSIIGPRKRLLVL 367
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 45.6 bits (103), Expect = 0.001
Identities = 30/83 (36%), Positives = 41/83 (49%)
Frame = -2
Query: 499 TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYG 320
TV +AGQ GY RT N ++ + +G +A T I GGF HYG
Sbjct: 240 TVPQAGQMGYQQRTISNVRVLKYSKG----------EDADT--------INVRGGFLHYG 281
Query: 319 EVNNDFVMIKGCCMGPKKRIITL 251
V ND+V++ G GP KR+I +
Sbjct: 282 LVKNDYVLLFGSVPGPAKRLIKM 304
Score = 38.3 bits (85), Expect = 0.19
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -3
Query: 708 KWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVACI 529
++A HL K I + + +D + R+ K LPRK K R + +
Sbjct: 170 EYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRKHRRMIGTL 229
Query: 528 GAWHPSRCRS 499
G WHP R+
Sbjct: 230 GPWHPDWVRN 239
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 43.2 bits (97), Expect = 0.007
Identities = 29/80 (36%), Positives = 37/80 (46%)
Frame = -2
Query: 490 RAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVN 311
+AGQ G+H RTE NK+I I +K +TP GGF YG V
Sbjct: 254 QAGQTGFHRRTEYNKRILMIDDDGYK--------------------VTPAGGFLRYGVVR 293
Query: 310 NDFVMIKGCCMGPKKRIITL 251
+ FVM+ G G KR I +
Sbjct: 294 STFVMLSGSIPGTPKRPIVM 313
Score = 33.5 bits (73), Expect = 5.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -3
Query: 705 WAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR--KTHKGLRKV 538
+A++ L I V+ VF + +++D I RW K+LPR K KG R++
Sbjct: 182 YAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRRI 239
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 41.9 bits (94), Expect = 0.015
Identities = 28/83 (33%), Positives = 40/83 (48%)
Frame = -2
Query: 499 TVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYG 320
TV GQ GYH RTE NK I +IG+ ++ + GG+ YG
Sbjct: 237 TVPMPGQMGYHRRTEYNKLIIKIGEPLNVE-----------------------GGWVRYG 273
Query: 319 EVNNDFVMIKGCCMGPKKRIITL 251
+V +++KG GP+KR+I L
Sbjct: 274 QVIGPTILLKGSVPGPRKRLIIL 296
Score = 39.1 bits (87), Expect = 0.11
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = -3
Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
+++A L K + ++ VF + + +D I R+H + K+ KG+RKV
Sbjct: 166 LEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVRKVGA 225
Query: 531 IGAWHPSR 508
IG+ P R
Sbjct: 226 IGSRGPGR 233
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 39.9 bits (89), Expect = 0.061
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = -2
Query: 496 VARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGE 317
V + GQ GYH RT+ NK++ I K I GG+ HYG
Sbjct: 269 VPQPGQMGYHRRTDYNKRVLMISDDPSK--------------------INVEGGWLHYGL 308
Query: 316 VNNDFVMIKGCCMGPKKRIITL 251
V + +V++KG GP KR I +
Sbjct: 309 VKSKYVVLKGSVFGPPKRPIIM 330
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 34.7 bits (76), Expect = 2.3
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = +2
Query: 287 TLDHHKIVVYFTIMGETSHWCNGFLRQVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTV 466
TL H ++ YF + +SH ++I + +++NNFA +F+ L D V+F+ +
Sbjct: 462 TLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL---CDNYVYFTPI 518
Query: 467 MITFLTST 490
I + S+
Sbjct: 519 NILSIYSS 526
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 34.3 bits (75), Expect = 3.0
Identities = 21/52 (40%), Positives = 25/52 (48%)
Frame = -2
Query: 274 PKKRIITLESLCVFIQRGLH*KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 119
PK + S C + G +R T +SLTP PS M SR R HSW H
Sbjct: 52 PKSLPLLAHSPCWCRRSGGLWRRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
>UniRef50_A7DRV5 Cluster: Multi-sensor signal transduction histidine
kinase precursor; n=1; Candidatus Nitrosopumilus
maritimus SCM1|Rep: Multi-sensor signal transduction
histidine kinase precursor - Candidatus Nitrosopumilus
maritimus SCM1
Length = 600
Score = 33.9 bits (74), Expect = 4.0
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +2
Query: 407 ILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHLEGCQAPMQATFLRPL 556
ILFV+ LSN ID + T+ I F TS+ + LE +P+ L +
Sbjct: 504 ILFVNLLSNAIDAVKENGTIKIRFFDETSHVKIELEDSGSPIPPNILEEM 553
>UniRef50_UPI00015BC67A Cluster: UPI00015BC67A related cluster; n=1;
unknown|Rep: UPI00015BC67A UniRef100 entry - unknown
Length = 347
Score = 33.5 bits (73), Expect = 5.3
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 246 LSKVMIRFLGPMQQPLIITKSLFTSP*WGKPPIGVMDFSDKSYSVDALFLITLPSFLW 419
L K + RF P P + K F W P IG +D K Y + + +PS+ W
Sbjct: 177 LEKRIYRFFAPALTPEVYIKKYFEQS-WKNPVIGGLDHHVKIYVREVGIRLLIPSYKW 233
>UniRef50_A7UFC3 Cluster: Formate dehydrogenase; n=1; Heliobacillus
mobilis|Rep: Formate dehydrogenase - Heliobacillus
mobilis
Length = 190
Score = 33.5 bits (73), Expect = 5.3
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = -1
Query: 548 LGKLPALELGILLGVVHCSSCWS-ERLSSPY--*NEQENLSYWTRNPQKGWQ 402
L +L E G L +HC S W ERL+ P+ E E L Y + GWQ
Sbjct: 86 LSRLSGDEEGRHLVCIHCQSMWEYERLACPHCGNKEPEKLDYLSTEEYPGWQ 137
>UniRef50_A6BE46 Cluster: Putative uncharacterized protein; n=2;
Clostridiales|Rep: Putative uncharacterized protein -
Dorea longicatena DSM 13814
Length = 152
Score = 33.5 bits (73), Expect = 5.3
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 308 VVYFTIMGETSHWCNGFLRQVILSRCIVF 394
+++FT GE HW + FLRQV+ RC +F
Sbjct: 41 MMFFTYQGELVHWQDDFLRQVL--RCSIF 67
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,226,037
Number of Sequences: 1657284
Number of extensions: 15439803
Number of successful extensions: 34957
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34929
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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