Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30579
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   101   8e-23
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   101   8e-23
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    29   0.50 
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    29   0.66 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.7  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   2.7  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   2.7  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  101 bits (243), Expect = 8e-23
 Identities = 51/86 (59%), Positives = 60/86 (69%)
 Frame = -2

Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
           V +TVARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF 
Sbjct: 260 VQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFV 312

Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
            YG V NDFVM+ G   GP KR++TL
Sbjct: 313 RYGVVENDFVMLNGATPGPVKRVLTL 338



 Score = 91.9 bits (218), Expect = 8e-20
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = -3

Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
           V+WAREH EK + + S F Q+EMID I           T+RW TK+LPRKTH+GLRKVAC
Sbjct: 192 VEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVAC 251

Query: 531 IGAWHPS 511
           IGAWHP+
Sbjct: 252 IGAWHPA 258



 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 38/61 (62%), Positives = 44/61 (72%)
 Frame = -1

Query: 290 GLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 111
           G   G  K    LRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 110 D 108
           D
Sbjct: 386 D 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  101 bits (243), Expect = 8e-23
 Identities = 51/86 (59%), Positives = 60/86 (69%)
 Frame = -2

Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
           V +TVARAG  GY HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF 
Sbjct: 260 VQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFV 312

Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
            YG V NDFVM+ G   GP KR++TL
Sbjct: 313 RYGVVENDFVMLNGATPGPVKRVLTL 338



 Score = 91.9 bits (218), Expect = 8e-20
 Identities = 40/67 (59%), Positives = 48/67 (71%)
 Frame = -3

Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
           V+WAREH EK + + S F Q+EMID I           T+RW TK+LPRKTH+GLRKVAC
Sbjct: 192 VEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVAC 251

Query: 531 IGAWHPS 511
           IGAWHP+
Sbjct: 252 IGAWHPA 258



 Score = 78.6 bits (185), Expect = 8e-16
 Identities = 38/61 (62%), Positives = 44/61 (72%)
 Frame = -1

Query: 290 GLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 111
           G   G  K    LRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385

Query: 110 D 108
           D
Sbjct: 386 D 386


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 129 HGYTQEGSYSRRSCGYHNPSVL 64
           HGY+   +  R+ C YHNPS+L
Sbjct: 307 HGYSMY-ALERKMCNYHNPSIL 327


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 398 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSY 496
           NFA+L+  SL ++ +F++H +T    +   T+Y
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY 409


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 365 QVILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 487
           ++ L RC++   F +LF  S S +  FL   S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +2

Query: 350 NGFLRQVILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHLEGCQA 526
           N FL  +  SRC V  N+ I + V S    ++F++     M+ + + +   ++ L     
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLYGSPSHKIQQSLRIASR 425

Query: 527 PMQ--ATFL 547
            +Q  ATFL
Sbjct: 426 ILQLPATFL 434


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 196 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 83
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,173
Number of Sequences: 5004
Number of extensions: 65805
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)