Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30579
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 125 3e-29
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 125 3e-29
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 2.8
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 29 3.7
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 29 4.8
07_01_0159 - 1116786-1117153,1117251-1119936 29 4.8
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 125 bits (302), Expect = 3e-29
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
VS+TVARAGQ GYHHRTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFP
Sbjct: 263 VSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFP 316
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
HYG V D++MIKGCC+GPKKR++TL
Sbjct: 317 HYGVVKGDYLMIKGCCVGPKKRVVTL 342
Score = 83.0 bits (196), Expect = 2e-16
Identities = 37/68 (54%), Positives = 45/68 (66%)
Frame = -3
Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
V + + EK IPVD+VF +DEMID I +RW +LPRKTH+GLRKVAC
Sbjct: 195 VDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVAC 254
Query: 531 IGAWHPSR 508
IGAWHP+R
Sbjct: 255 IGAWHPAR 262
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/68 (51%), Positives = 40/68 (58%)
Frame = -1
Query: 341 GRFPPLW*SKQRFCDDQGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 162
G FP K + +G G K LR+SL T R ALE+I LKFIDTSSKFGHG
Sbjct: 313 GGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHG 372
Query: 161 RFQTPADK 138
RFQT +K
Sbjct: 373 RFQTTDEK 380
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 125 bits (302), Expect = 3e-29
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
VS+TVARAGQ GYHHRTEMNKK+Y+IG K G+ + A TE+D +EK ITPMGGFP
Sbjct: 263 VSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFP 316
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
HYG V D++MIKGCC+GPKKR++TL
Sbjct: 317 HYGVVKGDYLMIKGCCVGPKKRVVTL 342
Score = 83.0 bits (196), Expect = 2e-16
Identities = 37/68 (54%), Positives = 45/68 (66%)
Frame = -3
Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
V + + EK IPVD+VF +DEMID I +RW +LPRKTH+GLRKVAC
Sbjct: 195 VDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVAC 254
Query: 531 IGAWHPSR 508
IGAWHP+R
Sbjct: 255 IGAWHPAR 262
Score = 67.3 bits (157), Expect = 1e-11
Identities = 39/76 (51%), Positives = 44/76 (57%)
Frame = -1
Query: 341 GRFPPLW*SKQRFCDDQGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 162
G FP K + +G G K LR+SL T R ALE+I LKFIDTSSKFGHG
Sbjct: 313 GGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHG 372
Query: 161 RFQTPADKAAFMGTLK 114
RFQT +K F G LK
Sbjct: 373 RFQTTDEKQRFFGKLK 388
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 370 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 275
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 2 FFFFFFALSNVYFHGRHLRLRSTLGLW 82
FFFFFF +VY RH R R W
Sbjct: 102 FFFFFFFSGDVYCGHRHFRRRRRRRQW 128
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -2
Query: 178 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRAAQP*VSSVK 38
PS V+ +RRR+ R +S + R + F+K P P+R + S+K
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPERNSVSSTRSIK 334
>07_01_0159 - 1116786-1117153,1117251-1119936
Length = 1017
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 398 NFAILFVDSLS-NTIDFLVHFSTVMITFLTSTSYSERHLEGCQAPMQATFLRPLCV-LRG 571
N +IL + +LS N + + + + FLT S+ HLEG Q P F + L G
Sbjct: 565 NLSILTLFNLSHNNLTGSIPIALSKLQFLTQLDLSDNHLEG-QVPTDGVFRNATAISLEG 623
Query: 572 SFFVC 586
+ +C
Sbjct: 624 NRQLC 628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,427,077
Number of Sequences: 37544
Number of extensions: 438476
Number of successful extensions: 960
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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