Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30579
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               112   3e-25
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)               97   1e-20
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)          91   6e-19
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)                 29   4.9  
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)                 29   4.9  
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)                    29   4.9  
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)                 29   4.9  
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)                 29   4.9  
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)                   29   4.9  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   4.9  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  112 bits (269), Expect = 3e-25
 Identities = 50/56 (89%), Positives = 55/56 (98%)
 Frame = -2

Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 341
           VSF+VARAGQ GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 262 VSFSVARAGQAGYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317



 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 44/68 (64%), Positives = 46/68 (67%)
 Frame = -3

Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
           V W RE LE P PV  VF+ DEMID I           T RW TKKLPRKTHKGLRKVAC
Sbjct: 194 VDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVAC 253

Query: 531 IGAWHPSR 508
           IGAWHP+R
Sbjct: 254 IGAWHPAR 261


>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/45 (93%), Positives = 45/45 (100%)
 Frame = -2

Query: 475 GYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 341
           GYHHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 2   GYHHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score = 91.5 bits (217), Expect = 6e-19
 Identities = 50/87 (57%), Positives = 56/87 (64%)
 Frame = -1

Query: 356 IHYTNGRFPPLW*SKQRFCDDQGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSS 177
           I +T G FP      + F   +G + G  K    LRKSL VHT R A EKI LKFIDTSS
Sbjct: 210 ICHTQGGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKITLKFIDTSS 269

Query: 176 KFGHGRFQTPADKAAFMGTLKKDRIRE 96
           KFGHGRFQ PA+K AFMG LK DR +E
Sbjct: 270 KFGHGRFQHPAEKRAFMGMLKSDREKE 296


>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 497

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 432 LDKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
           LDK     MA  +   HLLS+T  RNP LH++E++
Sbjct: 247 LDKRFQDEMAFNVSKCHLLSVTNKRNPSLHEYEIN 281


>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 415 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIK 290
           KK   V +N+  T  D    +   + GFPHY  + +D + IK
Sbjct: 44  KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85


>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
          Length = 291

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 173 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 206


>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
          Length = 453

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 204 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 237


>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
          Length = 347

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 275 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 308


>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 59  DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 92


>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
          Length = 1683

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429  DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
            D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 1091 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1124



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429  DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
            D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 1283 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1316


>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
          Length = 892

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 643 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 676


>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1022

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 832 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 865


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 895 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 928


>SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 193

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
           D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 75  DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 108


>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1176

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 429  DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 331
            D   T +MA  +   HLLS+T  RNP LH++E++
Sbjct: 979  DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1012


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -2

Query: 388  NASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCC 281
            ++STE++ + +     G F  +G+V ND   +  CC
Sbjct: 3492 HSSTEFNSTLRGGIKSGKFKDFGKVRNDVDCVNRCC 3527


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,595,567
Number of Sequences: 59808
Number of extensions: 521225
Number of successful extensions: 1085
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)