Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30579
(713 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 127 8e-30
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 124 4e-29
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 124 4e-29
At3g60400.1 68416.m06755 mitochondrial transcription termination... 29 3.1
At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 28 7.1
At4g38360.2 68417.m05424 expressed protein contains Pfam profile... 27 9.3
At4g24730.2 68417.m03539 calcineurin-like phosphoesterase family... 27 9.3
At4g24730.1 68417.m03538 calcineurin-like phosphoesterase family... 27 9.3
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 127 bits (306), Expect = 8e-30
Identities = 58/86 (67%), Positives = 70/86 (81%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
VS+TVARAGQ GYHHRTEMNKK+YR+G K G+ ++A TEYD +EK ITPMGGFP
Sbjct: 263 VSYTVARAGQNGYHHRTEMNKKVYRVG-----KVGQET-HSAMTEYDRTEKDITPMGGFP 316
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
HYG V D++MIKGCC+GPKKR++TL
Sbjct: 317 HYGIVKEDYLMIKGCCVGPKKRVVTL 342
Score = 82.2 bits (194), Expect = 3e-16
Identities = 36/68 (52%), Positives = 45/68 (66%)
Frame = -3
Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
V +A EK +PVD++F +DEMID I +RW +LPRKTH+GLRKVAC
Sbjct: 195 VDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVAC 254
Query: 531 IGAWHPSR 508
IGAWHP+R
Sbjct: 255 IGAWHPAR 262
Score = 57.2 bits (132), Expect = 1e-08
Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = -1
Query: 341 GRFPPLW*SKQRFCDDQGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 162
G FP K+ + +G G K LR++L T R A+E+I LKFID +S GHG
Sbjct: 313 GGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHG 372
Query: 161 RFQTPADKAAFMG-TLK 114
RFQT +KA F G T+K
Sbjct: 373 RFQTSQEKAKFYGRTIK 389
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 124 bits (300), Expect = 4e-29
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
VS+TVARAGQ GYHHRTE+NKKIYR+G K G + A TEYD +EK +TPMGGFP
Sbjct: 263 VSYTVARAGQNGYHHRTELNKKIYRLG-----KVGTEA-HTAMTEYDRTEKDVTPMGGFP 316
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
HYG V +D++MIKGCC+GPKKR++TL
Sbjct: 317 HYGIVKDDYLMIKGCCVGPKKRVVTL 342
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/68 (52%), Positives = 45/68 (66%)
Frame = -3
Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
V +A EK IP+++VF +DEMID I +RW +LPRKTH+GLRKVAC
Sbjct: 195 VDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVAC 254
Query: 531 IGAWHPSR 508
IGAWHP+R
Sbjct: 255 IGAWHPAR 262
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/77 (45%), Positives = 42/77 (54%)
Frame = -1
Query: 341 GRFPPLW*SKQRFCDDQGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 162
G FP K + +G G K LR+SL T R ALE+I LKFIDT+S FGHG
Sbjct: 313 GGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHG 372
Query: 161 RFQTPADKAAFMGTLKK 111
RFQT +K F + K
Sbjct: 373 RFQTSLEKMRFYNRVTK 389
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 124 bits (300), Expect = 4e-29
Identities = 57/86 (66%), Positives = 69/86 (80%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFP 329
VS+TVARAGQ GYHHRTE+NKKIYR+G K G + A TEYD +EK +TPMGGFP
Sbjct: 263 VSYTVARAGQNGYHHRTELNKKIYRLG-----KVGTEA-HTAMTEYDRTEKDVTPMGGFP 316
Query: 328 HYGEVNNDFVMIKGCCMGPKKRIITL 251
HYG V +D++MIKGCC+GPKKR++TL
Sbjct: 317 HYGIVKDDYLMIKGCCVGPKKRVVTL 342
Score = 81.8 bits (193), Expect = 4e-16
Identities = 36/68 (52%), Positives = 45/68 (66%)
Frame = -3
Query: 711 VKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPRKTHKGLRKVAC 532
V +A EK IP+++VF +DEMID I +RW +LPRKTH+GLRKVAC
Sbjct: 195 VDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVAC 254
Query: 531 IGAWHPSR 508
IGAWHP+R
Sbjct: 255 IGAWHPAR 262
Score = 60.5 bits (140), Expect = 1e-09
Identities = 35/77 (45%), Positives = 42/77 (54%)
Frame = -1
Query: 341 GRFPPLW*SKQRFCDDQGLLHGT*KAYHYLRKSLRVHTKRAALEKINLKFIDTSSKFGHG 162
G FP K + +G G K LR+SL T R ALE+I LKFIDT+S FGHG
Sbjct: 313 GGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHG 372
Query: 161 RFQTPADKAAFMGTLKK 111
RFQT +K F + K
Sbjct: 373 RFQTSLEKMRFYNRVTK 389
>At3g60400.1 68416.m06755 mitochondrial transcription termination
factor-related / mTERF-related contains Pfam profile
PF02536: mTERF
Length = 558
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Frame = -2
Query: 472 YHHRTEMNKKIYRIGQGIHKKDGK--VIKNNASTEYDLSEKSITPMGGFPHYG 320
Y MNK Y G+ K+D +++N A +DL + I+ G H+G
Sbjct: 262 YSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKPVISVTGMLKHFG 314
>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
similar to rac GTPase activating protein 1 [Lotus
japonicus] GI:3695059; contains Pfam profile PF00620:
RhoGAP domain
Length = 466
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -2
Query: 205 STSNSLTPRPSSVMVDSRRRLTRLHSWVHSRR 110
S+S+S +P PSS+ SR T L S H+RR
Sbjct: 17 SSSSSSSPSPSSLSYASRSNATLLISSDHNRR 48
>At4g38360.2 68417.m05424 expressed protein contains Pfam profile
PF03619: Domain of unknown function
Length = 485
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -2
Query: 508 VSFTVARAGQKGYHHRTEMNKKIYRIGQGI--HKKDGKVIKNNASTEYDLSEKSI 350
V FTV +A + T+ N+K+++I Q I H K+ + +K+++ S + I
Sbjct: 373 VRFTVTQAVEPMEKSITKFNEKLHKISQNIKKHDKEKRRVKDDSCMSSSPSRRVI 427
>At4g24730.2 68417.m03539 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 311
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 135 CIHGYTQEGSYSRRSCGYHNPSVLRSLKCRP 43
C+ G+ +G Y S G H+ S+ +L+C P
Sbjct: 251 CLSGHDHKGGYFVDSHGVHHRSLEAALECPP 281
>At4g24730.1 68417.m03538 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 311
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 135 CIHGYTQEGSYSRRSCGYHNPSVLRSLKCRP 43
C+ G+ +G Y S G H+ S+ +L+C P
Sbjct: 251 CLSGHDHKGGYFVDSHGVHHRSLEAALECPP 281
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,369,182
Number of Sequences: 28952
Number of extensions: 353742
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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