Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30578
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   0.86 
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    25   3.5  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    24   6.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   8.1  
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2...    23   8.1  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    23   8.1  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.6 bits (56), Expect = 0.86
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 195  WYLTKNVQLKINSLALNLCEYNINLT 272
            W+L+  VQL   S +  LCE+ +N+T
Sbjct: 2248 WFLSVVVQLLEKSSSFELCEHILNVT 2273


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -3

Query: 190 IYFRIFVVITKQSSVKSALYLAAL-LPPRIVSYIWGCSTSLLSWVCSATVAGV 35
           IY  +F+++    +  S L + AL L   +++++ G   +  S + +AT+AGV
Sbjct: 150 IYVGLFILLLSAFNYCSKLIIKALPLISMVIAWV-GVVIAAFSVIITATIAGV 201


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 120 SAAKYSALLTLLCFVITTKILK*IFWYLTKNV 215
           S AKY+  LTL  FV +++ L   F YLT+ V
Sbjct: 506 SFAKYAIYLTLSTFVCSSRYLL-DFHYLTQVV 536


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 43  PRSPSKPRITS*CCTPKYTKRYAAAVA 123
           P S S+P I S   TP  T  Y++ V+
Sbjct: 78  PTSSSEPSIFSESATPSETNSYSSPVS 104


>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 30  DGTPATVAEQTQDNKLVLH 86
           DGTPAT A+  +D    LH
Sbjct: 238 DGTPATTAQAAKDVVNFLH 256


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 51  AEQTQDNKLVLHPQIYETIRGG 116
           AE+T+   +V  P I++ ++GG
Sbjct: 104 AEETKPTTVVKKPSIWQRVKGG 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,668
Number of Sequences: 5004
Number of extensions: 20082
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)