Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30578
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1044 - 25649296-25649730 29 0.77
06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,608... 27 2.3
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 27 3.1
09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022 27 4.1
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945... 27 4.1
05_03_0367 + 13124881-13125489,13125543-13126310 26 5.4
02_01_0391 + 2838471-2838794,2838892-2839028,2841155-2841631,284... 26 5.4
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034 26 7.2
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 26 7.2
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786 26 7.2
02_04_0321 + 22020126-22020431,22020520-22021626 26 7.2
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429... 26 7.2
02_02_0159 + 7299685-7300572 26 7.2
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 25 9.5
04_04_1605 - 34729853-34730173,34730385-34730628,34730729-34730940 25 9.5
>12_02_1044 - 25649296-25649730
Length = 144
Score = 29.1 bits (62), Expect = 0.77
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 139 ALYLAALLPPRIVSYIWGCSTSLLSWVCSATVAGVPSWSPSL 14
+L +A ++PP S GC+ + + ++T G SW+P L
Sbjct: 101 SLSVAEVMPPVKASRAHGCTECGVEFDSASTYGGTTSWAPRL 142
>06_01_0004 -
59511-59576,59749-59806,60101-60144,60455-60512,
60810-60867,61165-61222,61871-61928,62225-62282,
62579-62636,62933-62990,63285-63328,63639-63696,
64699-64742,65053-65110,65407-65464,66114-66171,
66468-66818,68051-68108,68405-68462,68759-68816,
69113-69170,69466-69509,69820-70170,71048-71091,
71755-71812,72109-72291,72463-72520,72815-72858,
73877-73920,74584-74641,74938-74995,75292-75349,
75643-75700,75997-76179,76351-76408,76702-76745,
77056-77238,77410-77467,77766-77823,78120-78177,
78473-78530,78826-78869,79180-79362,79534-79591,
79885-79942,80239-80296,80592-80649,80946-81003,
81652-81709,82361-82440,83067-83124,83421-83603,
84127-84184,84480-84537,85188-85245,85541-85598,
85895-85950
Length = 1472
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 49 SPSKPRITS*CCTPKYTKRYAAAVALL 129
SP+KP + CC P +R+A A L
Sbjct: 725 SPNKPLLPGLCCGPSDIRRFAETTAAL 751
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 49 SPSKPRITS*CCTPKYTKRYAAAVA 123
SP+KP + CC P +R+A A
Sbjct: 9 SPNKPLLPGLCCGPSDIRRFAETTA 33
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 49 SPSKPRITS*CCTPKYTKRYAAAVA 123
SP +P + CC P +R+A A A
Sbjct: 290 SPKQPLLRGQCCGPSDIRRFAEATA 314
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 49 SPSKPRITS*CCTPKYTKRYAAAVA 123
SP +P + CC P +R+A A A
Sbjct: 443 SPKQPLLRGQCCGPSDIRRFAEATA 467
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 49 SPSKPRITS*CCTPKYTKRYAAAVA 123
SP +P + CC P +R+A A A
Sbjct: 538 SPKQPLLRGQCCGPSDIRRFAEATA 562
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 114 GSSAAKYSALLTLLCFVITTK 176
G++AA+YSALL+L C IT +
Sbjct: 5 GAAAAEYSALLSLSCGPITRR 25
>09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022
Length = 530
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 33 GTPATVAEQTQDNKLVLHPQIYETIRGGSSAAKYSALLT 149
G PA ++ L P I++++ G+SAA YS+++T
Sbjct: 294 GIPAFQQLSGMNSILFYSPVIFQSLGFGNSAALYSSIIT 332
>01_05_0033 +
17390571-17390894,17394152-17394199,17394479-17394526,
17395224-17395400,17395492-17395642,17395742-17395828,
17397236-17397360,17397608-17397726,17399983-17400082,
17400188-17400223
Length = 404
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 21 GDHDGTPATVAEQTQDNKLVLH-PQIYETIRGGSSAAKYSAL 143
G G PA + + N + H PQ Y +RG + A YSAL
Sbjct: 32 GRPSGAPACADRRLRLNPNMEHKPQDYSDVRGEYAPAVYSAL 73
>05_03_0367 + 13124881-13125489,13125543-13126310
Length = 458
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -1
Query: 72 CYPGFARRPWPVYRRGLPASG 10
C P F +RP PV RRG G
Sbjct: 115 CRPTFTQRPLPVRRRGGDGDG 135
>02_01_0391 +
2838471-2838794,2838892-2839028,2841155-2841631,
2841719-2841999,2843009-2843051,2844094-2844148,
2845771-2845824,2846282-2846314,2846574-2846621,
2846885-2846950,2847286-2847426
Length = 552
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -3
Query: 193 NIYFRIFVVITKQSSVKSALYLAALLPPRIVSYIWGCS 80
+ Y +++ Q V+ LY+ A R+ + +W CS
Sbjct: 386 HFYVHLWIFAYSQLEVEECLYVLAFSNSRLGAQLWRCS 423
>08_02_0853 -
21898293-21899564,21899910-21899964,21900079-21901034
Length = 760
Score = 25.8 bits (54), Expect = 7.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 93 FGGAALACYPGFARRPWPVYRRG 25
FGGA + GF ++PW V +G
Sbjct: 7 FGGAVGSLPSGFGKKPWLVQAQG 29
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 49 SPSKPRITS*CCTPKYTKRYAAAVA 123
SP++P++ CC P +R+A A
Sbjct: 403 SPNQPQLRGLCCGPSDIRRFAETTA 427
>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
Length = 290
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 28 TTVHRPRSPSKPRITS*CCTPKYTKRYAAAVALLNIAR 141
T +HRPR+ + P T +P + R A +LL++ R
Sbjct: 16 TYLHRPRTLAPPASTPARLSPSSSSRRPATPSLLSLRR 53
>02_04_0321 + 22020126-22020431,22020520-22021626
Length = 470
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -1
Query: 123 RYCRRVSFRIFGGAALACYPGFA 55
RY RR F + GG L C G A
Sbjct: 295 RYGRRTLFMVGGGVLLVCLTGMA 317
>02_03_0084 -
15041261-15041437,15041625-15041765,15042857-15042946,
15043111-15043201,15043953-15044155,15045361-15045438,
15045535-15045651,15046111-15046161,15046405-15046500,
15046726-15046742,15046938-15047064,15050585-15050681,
15051565-15051638,15051910-15051993,15052099-15052290,
15054191-15054319,15055607-15055639,15055747-15055843,
15055940-15055990,15057494-15057564,15058305-15058455,
15058625-15058703,15059265-15059346,15060335-15060335,
15060565-15060620,15060969-15061018,15061511-15061580
Length = 834
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = -3
Query: 259 LYSHKFNAKLLIFS*TFLVKYQNI--YFRIFVVITKQSSVKSALYLAALLPPRIVSYIWG 86
L SHK+NA L + + ++ + R+ + K L L+P ++ + +W
Sbjct: 266 LDSHKYNACLNTMATRISTVFASMREFPRVHYRVAKTIDASVTTTLRDLVPTKLAAAVWN 325
Query: 85 CSTSL 71
C + L
Sbjct: 326 CLSKL 330
>02_02_0159 + 7299685-7300572
Length = 295
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -1
Query: 90 GGAALACYPGFARRPWPVYR 31
GG +A PG ARR W V R
Sbjct: 6 GGKVVAAEPGVARRLWRVVR 25
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = -3
Query: 148 VKSALYLAALLPPRIVSYIWGCSTSLLSWVCSATVAGVPSWSPSLW 11
+ AL++ +LPP++ + TS V T+ W S+W
Sbjct: 432 ISLALFIHGVLPPQVFGFTVEKVTSDYFEVSQETLKNTLVWMASIW 477
>04_04_1605 - 34729853-34730173,34730385-34730628,34730729-34730940
Length = 258
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 90 GGAALACYPGFARRPWPVYRR 28
GGAALAC G AR Y R
Sbjct: 51 GGAALACVAGHARNGLSGYER 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,594,927
Number of Sequences: 37544
Number of extensions: 137292
Number of successful extensions: 395
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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