Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30578
         (312 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)                   27   4.1  
SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)           27   4.1  
SB_56411| Best HMM Match : MoCF_biosynth (HMM E-Value=4.8)             26   5.4  
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)             26   5.4  
SB_46840| Best HMM Match : S-methyl_trans (HMM E-Value=4.2)            26   7.2  
SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)                      26   7.2  

>SB_47760| Best HMM Match : DUF1168 (HMM E-Value=2.1)
          Length = 438

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 39  PATVAEQTQDNKLVLHPQIYETIRGGSSAAKYSALLTLL 155
           P    +Q +DN+ V+HP +Y  I G       + L+ L+
Sbjct: 18  PPRRQQQEKDNRAVIHPYMYYVIGGLGGIVLLTLLVGLI 56


>SB_46755| Best HMM Match : zf-C2H2 (HMM E-Value=1.09301e-43)
          Length = 1806

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 87   PQIYETIRGGSSAAKYSALLTLL 155
            P+IY TI  GSS+  YS L T L
Sbjct: 1653 PRIYSTITQGSSSVGYSPLNTRL 1675


>SB_56411| Best HMM Match : MoCF_biosynth (HMM E-Value=4.8)
          Length = 358

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 123 RYCRRVSFRIFGGAALACYPGFARRPWPVY 34
           RY   V F +F    L C PG  R  +PV+
Sbjct: 318 RYVYPVFFAMFTRCFLLCLPGVVRYVYPVF 347



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 123 RYCRRVSFRIFGGAALACYPGFARRPWPVY 34
           RY   VSF +F      C PG  R  +PV+
Sbjct: 295 RYVYPVSFAMFTRCLSLCLPGVFRYVYPVF 324


>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
          Length = 492

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 123 RYCRRVSFRIFGGAALACYPGFARRPWPVY 34
           RY  +V F +F    L C PG  R  +PV+
Sbjct: 108 RYDYQVFFAMFTRCFLLCLPGVFRYDYPVF 137


>SB_46840| Best HMM Match : S-methyl_trans (HMM E-Value=4.2)
          Length = 774

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 19  WETTTVHRPRSPSKPRITS*CCTPKYTKRY 108
           W  T    PR  S+ R+TS C T     +Y
Sbjct: 555 WNKTRAGSPRQSSRTRVTSACRTGSEDSQY 584


>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 22  ETTTVHRPRSPSKPR 66
           ETTT H PR  S+PR
Sbjct: 345 ETTTPHTPRQTSRPR 359


>SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)
          Length = 697

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 2   DRKPEAGRPRRYTGHGRRANP 64
           D  P  GRP  Y G G+RA P
Sbjct: 550 DSPPADGRPVPYVGVGQRATP 570


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,626,419
Number of Sequences: 59808
Number of extensions: 151252
Number of successful extensions: 382
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 387973711
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)