Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30578
         (312 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical pr...    26   4.8  
Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical p...    26   6.4  
Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical pr...    26   6.4  
Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical pr...    25   8.4  

>L16685-8|AAO12393.1|  285|Caenorhabditis elegans Hypothetical
           protein ZC21.6a protein.
          Length = 285

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -3

Query: 106 IVSYIWGCSTSLLSWVCSATV 44
           +V Y+W  + +L+ W+C   +
Sbjct: 216 VVLYMWNTAAALIGWICRMVI 236


>Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical
           protein C55A1.15 protein.
          Length = 142

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = -3

Query: 253 SHKFNAKLLIFS*T-FLVKYQNIYFRIFVVITKQSSVKSALYLAALLPPRIVSYIWG 86
           +H+ + ++LI+  T    +   I++ IFV  +   SV   LYL  ++ P IV + +G
Sbjct: 52  NHERDKEILIYPITKHFCQMVKIFYLIFVFASIILSVFEKLYLLNVIIPVIVFFCFG 108


>Z75533-7|CAA99820.1|  285|Caenorhabditis elegans Hypothetical
           protein C54G4.8 protein.
          Length = 285

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 30  DGTPATVAEQTQDNKLVLH 86
           DGTPAT+++Q +D    +H
Sbjct: 209 DGTPATMSQQAKDVSAFMH 227


>Z70208-1|CAA94141.1|  339|Caenorhabditis elegans Hypothetical
           protein F54B11.1 protein.
          Length = 339

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 20  GRPRRYTGHGRRANPG*QASAAPPNIRNDTRR 115
           GRP R  GHG    PG  AS   P  ++  ++
Sbjct: 156 GRPGRPGGHGMPGMPGLGASPCQPRTQSQCQQ 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,372,610
Number of Sequences: 27780
Number of extensions: 111528
Number of successful extensions: 290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)