Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30578
         (312 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   2.0  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.6  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    20   6.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   6.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    20   6.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   8.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -3

Query: 70  LSWVCSATVAGVPSWSPSLWFAI 2
           L  VCSA V     W P  W  I
Sbjct: 544 LVMVCSAPVWRFQPWGPFTWGGI 566


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 85  TPKYTKRYAAAVALL 129
           T KY+KRY  AVA +
Sbjct: 319 TYKYSKRYKMAVAFM 333


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 58  CSATVAGVPSWSPSL 14
           CS T  GVPS SP+L
Sbjct: 589 CSTT-GGVPSKSPTL 602


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -3

Query: 67  SWVCSATVAGVPSWSP 20
           +W+     +G+P+W P
Sbjct: 329 NWMTYMPPSGIPNWVP 344


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 111 GGSSAAKYSALLTLLCFVITTKILK*IFWYLTKNVQLKINSLA 239
           GG      S L  +L  V+ T  +    W LT+    K +S A
Sbjct: 48  GGGGLGIASGLSAMLSLVVVTVAISTGEWLLTEEKLPKTSSNA 90


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -3

Query: 67  SWVCSATVAGVPSWSP 20
           +W+     +G+P+W P
Sbjct: 329 NWMTYMPPSGIPNWVP 344


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 82  STSLLSWVCSATVAGVPSWSPSLWFAI 2
           S +L++ +   T  G+P+   SL FA+
Sbjct: 443 SAALITMLIVLTALGLPTNDISLLFAV 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,562
Number of Sequences: 438
Number of extensions: 1520
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)