Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30578
(312 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61240.2 68414.m06901 expressed protein contains Pfam profile... 28 1.1
At1g61240.1 68414.m06900 expressed protein contains Pfam profile... 28 1.1
At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi... 27 2.0
At5g01460.1 68418.m00059 LMBR1 integral membrane family protein ... 27 3.5
At3g08930.2 68416.m01039 LMBR1 integral membrane family protein ... 27 3.5
At3g08930.1 68416.m01040 LMBR1 integral membrane family protein ... 27 3.5
At3g17400.1 68416.m02223 F-box family protein contains Pfam prof... 26 4.6
At2g13650.2 68415.m01505 GDP-mannose transporter (GONST1) identi... 26 6.1
At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identi... 26 6.1
At1g44010.1 68414.m05077 hypothetical protein 26 6.1
At5g62480.1 68418.m07841 glutathione S-transferase, putative 25 8.1
At5g55135.1 68418.m06874 hypothetical protein 25 8.1
At2g19980.1 68415.m02336 allergen V5/Tpx-1-related family protei... 25 8.1
At2g03350.1 68415.m00294 expressed protein contains Pfam profile... 25 8.1
>At1g61240.2 68414.m06901 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 111 GGSSAAKYSALLTLLCFVITTKILK*IFWYLTKNVQ 218
GG S+ K ++ L+C V+ IFWY T N+Q
Sbjct: 24 GGKSSWKMKPVVVLMCTVLL------IFWYKTTNIQ 53
>At1g61240.1 68414.m06900 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 111 GGSSAAKYSALLTLLCFVITTKILK*IFWYLTKNVQ 218
GG S+ K ++ L+C V+ IFWY T N+Q
Sbjct: 24 GGKSSWKMKPVVVLMCTVLL------IFWYKTTNIQ 53
>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile: PF00515 TPR Domain (5
copies)
Length = 1064
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 127 AALLPPRIVSYIWGCSTSLLSWVCSATVAGVPSWSPSL 14
A + P+ +S ++G ++ LLSW G W+ SL
Sbjct: 218 ALKISPQNISVLYGLASGLLSWSKECINLGAFGWAASL 255
>At5g01460.1 68418.m00059 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 509
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Frame = -1
Query: 108 VSFRIFGGAALACYP-----GFARRPWPVYRR 28
V F IFGG +AC P F RRP V R
Sbjct: 218 VLFTIFGGVGIACLPLGLITAFIRRPKAVITR 249
>At3g08930.2 68416.m01039 LMBR1 integral membrane family protein
contains 5 transmembrane domains; contains Pfam PF04791:
LMBR1-like conserved region; similar to unknown protein
GB:BAA83351 [Oryza sativa]
Length = 526
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Frame = -1
Query: 108 VSFRIFGGAALACYP-----GFARRPWPVYRR 28
V F IFGG +AC P F RRP V R
Sbjct: 235 VLFTIFGGVGIACLPLGLITAFIRRPKAVITR 266
>At3g08930.1 68416.m01040 LMBR1 integral membrane family protein
contains 5 transmembrane domains; contains Pfam PF04791:
LMBR1-like conserved region; similar to unknown protein
GB:BAA83351 [Oryza sativa]
Length = 310
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Frame = -1
Query: 108 VSFRIFGGAALACYP-----GFARRPWPVYRR 28
V F IFGG +AC P F RRP V R
Sbjct: 19 VLFTIFGGVGIACLPLGLITAFIRRPKAVITR 50
>At3g17400.1 68416.m02223 F-box family protein contains Pfam
profile: PF00646 F-box domain
Length = 185
Score = 26.2 bits (55), Expect = 4.6
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = -3
Query: 103 VSYIWGCSTSLLSWV--CSATVAGVPSWSPSLWF 8
+SY++ C + +L C+ V P W +LWF
Sbjct: 101 ISYVYHCDSLVLCIPKDCARLVVWNPYWGQTLWF 134
>At2g13650.2 68415.m01505 GDP-mannose transporter (GONST1) identical
to GDP-mannose transporter SP:Q941R4 from [Arabidopsis
thaliana]
Length = 284
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 277 LIVKFILYSHKFNAKLLIFS*TFLVKYQNIYFRIFVV 167
L+ KF+L S+ FNA + FL+ YQN I VV
Sbjct: 49 LVNKFVLSSYNFNAGI------FLMLYQNFVSVIIVV 79
>At2g13650.1 68415.m01504 GDP-mannose transporter (GONST1) identical
to GDP-mannose transporter SP:Q941R4 from [Arabidopsis
thaliana]
Length = 333
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 277 LIVKFILYSHKFNAKLLIFS*TFLVKYQNIYFRIFVV 167
L+ KF+L S+ FNA + FL+ YQN I VV
Sbjct: 49 LVNKFVLSSYNFNAGI------FLMLYQNFVSVIIVV 79
>At1g44010.1 68414.m05077 hypothetical protein
Length = 227
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 201 LTKNVQLKINSLALNLCEYNINLTIN*NS 287
LTKN +KI+ + + E+N+N+TI +S
Sbjct: 6 LTKNKHIKIHGDSSSNDEHNVNITITNDS 34
>At5g62480.1 68418.m07841 glutathione S-transferase, putative
Length = 240
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 152 TLLRYNHKDSKINILVFN*KRSTEN 226
TLLRYN KI +LV N K +E+
Sbjct: 47 TLLRYNPVHKKIPVLVHNGKPISES 71
>At5g55135.1 68418.m06874 hypothetical protein
Length = 112
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 43 PRSPSKPRITS*CCTPKYTKRYAAA 117
P+S SKP IT+ C Y KR +A+
Sbjct: 8 PKSISKPNITTSCIYSFYLKRGSAS 32
>At2g19980.1 68415.m02336 allergen V5/Tpx-1-related family protein
low similarity to SP|P33154 Pathogenesis-related protein
1 precursor (PR-1) {Arabidopsis thaliana}; contains Pfam
profile PF00188: SCP-like extracellular protein
Length = 165
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 66 DNKLVLHPQIYETIRGGSSAAKYS 137
D KL H Q Y +R A KYS
Sbjct: 49 DQKLAAHAQRYANVRSQDCAMKYS 72
>At2g03350.1 68415.m00294 expressed protein contains Pfam profile
PF04398: Protein of unknown function, DUF538
Length = 179
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 154 SSVKSALYLAALLPPRIVSYIWGCSTSLLSWVCSATVAGVPSWSPSLWF 8
S+++ A + +L + + G T +L WV T++ S S LWF
Sbjct: 105 SAIRYATRVKGILLRGKLMGVEGMKTKVLVWVKVTTISVESSKSDKLWF 153
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,975,958
Number of Sequences: 28952
Number of extensions: 101670
Number of successful extensions: 292
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 331449360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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